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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagccattcttagctcaatttttttttaacttctctctctctctctatctctatctctctatctccctatctatccatctatatatctatctccagccgttcttttagacatccttatctgcaattttcttcgggagcattgatggggttttgttattctcttgatactctagGAGCTGTTGGGTTTTTGGGCTCCAATTTGTTCGTAAGGAGGATCTACCGAAACATCAAATGTGACTAGTGATTTGTCCAAAGGCCATTTTGATAGGATAA

Basic information

species Vitis vinifera
transcript Vv18s0041g00680.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA05G30210.1 (Glycine max), 3'ss of exon 11
gtaagtagccattcttagctcaatttttttttaacttctctctctctctctatctctatctctctatctccctatctatccatctatatatctatctccagccgttcttttagacatccttatctgcaattttcttcgggagcattgatggggttttgttattctcttgatactctagGAGCTGTTGGGTTTTTGGGCTCCAATTTGTTCGTAAGGAGGATCTACCGAAACATCAAATGTGACTAGTGATTTGT---CCAAA---GGCCATTTTGATAGGATAA
                                      |   |||   || || |   |     | || ||||   |||     |  ||||||     |    | |  || || |   ||| | |  | | | ||            || ||||| |  | |    || |   |  ||||||||| || ||| | || || ||||||||||| |||||||||||| |||||||||| || || ||  | ||| |    || |   |  || ||  |||      
-------------------------------------gtaagtcttcttcaatttgatttagattttcaccctgcttatgtgattggatatct--tatcgtgtgctgattaagccccacttctttctattgtcctg----------aattgggttataatttatctttaaatgtgcagGAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAAACATCAAGTGCGATTAAGGTTTTCTGAGTCAGACCTGAGCACTTCCATA------

upper sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA12G29120.1 (Glycine max), 3'ss of exon 11
gtaagtagccattcttagctcaatttttttttaacttctctctctctctcta---tctctatctctctatctccctatctatccatctatatatctatctccagccgttcttttagacatccttatctgcaattttcttcgggagcattgatggggttttgttattctcttgatactctagGAGCTGTTGGGTTTTTGGGCTCCAATTTGTTCGTAAGGAGGATCTACCGAAACATCAAATGTGACTAGTGATTTGTCCAAAGGCCATTTTGATAGGATAA
                               ||| |  ||  | |   | ||   |||  |    |      || ||  ||     ||  ||| || | |  |    || | |||   || ||    ||   ||    |    | | |  || || ||   || |||||   ||   | ||||||||| || | | | || || |||||||| || |||||||||||| |||||||||| ||||||||  | |||      || |       | || |   
------------------------------gtaagtcttcagtttaattgtaatctctgcagaaatgggataccttagttaagtg-ctgaatacctttttttaatatttatatta---atgctagagtgttcttaatcttatca-cttgaattggattaaatttttctccaaatgtgc-agGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAAACATCAAGTGTGACTAAGGCTTTTGTAGGAGTCTGAGACCAGAGCACTT

upper sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G20100.1 (Glycine max), 3'ss of exon 11
gtaagtagccattcttagctcaatttttttttaacttctct-ctctctctctatctctatctctctatctccctatctatccatctatatatctatctccagccgttcttttagacatccttatctgcaattttcttcgggagcattgatggggttttgttattctcttgatactctagGAGCTGTTGGGTTTTTGGGCTCCAATTTGTTCGTAAGGAGGATCTACCGAAACATCAAATGTGACTAGTGATTTGTCCAAAGGCCATTTTGATAGGATAA
||||||   || | | |    ||| | | |||   || | |  || ||||  |    |      |  | ||| ||   |     | | ||| || | |       |  | |||   || ||    |  | | |||||       ||     || ||   || |||||   ||   | ||||||||| || | | | || || |||||||| || |||||||||||| |||||||||| ||||||||  | |||      || |       | || |   
gtaagtcttcagtttaattgtaatctctgtttggattgtgtgttcactctgcagaattgggataccttgtccttagtcaattgccaa-atacctcttttttatattaatatta---atgctagagtagagtgttctt-aatcttatcatatggattaaatttttctccaaatgtgc-agGAGCTGTGGGTTATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACAGAAACATCAAGTGTGACTAAGGCTTTTGTAGGAGTCTGAGACCAGAGCACTT

upper sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaagtagccattcttagctcaatttttttttaacttctctctctctctctatctctatctctctatctccctatctatccatctatatatctatctccagccgttcttttagacatccttatctgcaattttcttcgggagcattgatggggttttgttattctcttgatactctagGAGCTGTTGGGTTTTTGGGCTCCAATTTGTTCGTAAGGAGGATCTACCGAAACATCAAATGTGACTAGTGATTTGTCCAAAGGCCATTTTGATAGGATAA--
                                                                                      |      | |||    |  ||| ||   ||  ||     |   | || ||     |  ||||       ||  |  | |    ||  |  |||||||||||| |   |||| || ||| |||| ||||||||||||||| |||||||||| || ||||||      |   || ||  |    || |  | ||  
-------------------------------------------------------------------------------------gtgagctca-ctctcttcactctctt---caaactagcgagtggtgttatt-----gatttgactaaaccttcgttatgtgaaaattttgcagGAGCTGTTGGCTACCTGGGATCAAATCTGTTTGTAAGGAGGATCTACAGAAACATCAAGTGCGACTAGAAGA--GGTAAACGGAAAAAAAGAGAAAACAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcaattttcttcgggagcattgatggggttttgttattctcttgatactctagGAGCTGTTGGGTTTTTGGGCTCCAATTTGTTCGTAAGGAGGATCTACCGAAACATCAAATGTGACTAGTGATTTGTCCAAAGGCCATTTTGATAGGATAA
                                         tcttgat  putative branch site (score: 4)
                                      ttctcttg  CT-rich tract
                              ttttgttatt  TA-rich tract