Sequence
atgc intronic sequence ATGC exonic sequencegtaacctgcagacttctatacaggtgtaacagaaaactatgtgcactggtataatttgtgaaaacttctcttctgaccattttgagtctgcagGGCGAGGTTGCTGTGAACCGCCGTGTGGACACAAAATCATATACTTCTCTTCACACTCTTGTGAATGGCATGTTTCCATCCACATCCTCTTCTGAGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g10680.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA04G04060.1 (Glycine max), 3'ss of exon 14
gtaacctgcagacttctatacaggtgtaacagaaaactatgtgc-----actggtataatttgtgaaaacttct---cttctgaccattttgagtctgcagGGCGAGGTTGCTGTGAACCGCCGTGTGGACACAAAATCATATACTTCTCTTCACACTCTTGTGAATGGCATGTTTCCATCCACATCCTCTTCTGAGCAG
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gtaaataaatccttcttttttaaaagtaaaaatttgcttcatgctagaagttcctaaaatgtttgaagttcgtcaaacctttcttatttttaagttcgcagGGAGAGGTGGTTATAAACCGCCGTGTTGACGCAAAATCATATACTTCTCTGCATGCTCTTGTGAATGGAATGTTCCCCCCTACGAGCTCTTCTGAGCAG
upper sequence: Vv18s0001g10680.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA06G04230.1 (Glycine max), 3'ss of exon 15
gtaacctgcagacttctatacaggtgtaacagaaaactatgtgc-----actggtataatttgtgaaaact-----tctcttctgaccattttgagtctgcagGGCGAGGTTGCTGTGAACCGCCGTGTGGACACAAAATCATATACTTCTCTTCACACTCTTGTGAATGGCATGTTTCCATCCACATCCTCTTCTGAGCAG
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gtaaa-taaatcctttttttaaaaagtaaaaatttccttggtgctagaagttcctaaaatgtttgaagttcgtcaaacctttcttatt-ttttaagttcgcagGGAGAGGTGGTTGTAAACCGTCGTGTTGACACAAAATCATATACTTCTCTGCATGCTCTCGTGAATGGAATGTTCCCCCCTACTAGCTCTTCTGAGCAG
upper sequence: Vv18s0001g10680.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA17G36130.1 (Glycine max), 3'ss of exon 10
gtaacctgcag-acttctatacaggtgtaacagaaaactatgtgcactggt-ataatttgtgaaaacttctcttctgacc-----attttgagtctgcagGGCGAGGTTGCTGTGAACCGCCGTG---TGGACACAAAATCATATACTTCTCTTCACACTCTTGTGAATGGCATGTTTCCATCCACATCCTCTTCTGAGCAG
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gtatgtattagtattttgaaacaaataaatgataaaagtacctgaattgtttatagtttgc-aaaacttctattctcatttctgagttttcacttttcagGGAGAGATTGCTGTAAACCGTCGTTGTTTTGACACAAAATCATATACTTCTCTGCATTCTCTGGTGAATGGAATGTTCCCCCCTACAAACTCATCTGAAC--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110363569|gb|EC927167.1|EC927167EST: ACCTTAAGGTTGGAATTCCAAAAGGCAAAATATTCATCATTAATCCTAAG GGCGAGGTTGCTGTGAACCGCCGTGTGGACACAAAATCATATACTTCTCTT
genomic: ACCTTAAGGTTGGAATTCCAAAAGGCAAAATATTCATCATTAATCCTAAGgtaacctgca ... gagtctgcagGGCGAGGTTGCTGTGAACCGCCGTGTGGACACAAAATCATATACTTCTCTT
EST:
gi|110363384|gb|EC926967.1|EC926967EST: ATTCCAAAAGGCAAAATATTCATCATTAATCCTAAG GGCGAGGTTGCTGTGAACCGCCGTGTGGACACAAAATCATATACTTCTCTT
genomic: ATTCCAAAAGGCAAAATATTCATCATTAATCCTAAGgtaacctgca ... gagtctgcagGGCGAGGTTGCTGTGAACCGCCGTGTGGACACAAAATCATATACTTCTCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtgcactggtataatttgtgaaaacttctcttctgaccattttgagtctgcagGGCGAGGTTGCTGTGAACCGCCGTGTGGACACAAAATCATATACTTCTCTTCACACTCTTGTGAATGGCATGTTTCCATCCACATCCTCTTCTGAGCAG
ttctgac putative branch site (score: 2)
tataatttgtgaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacctgcagacttctatacaggtgtaacagaaaactatgtgcactggtataatttgtgaaaacttctcttctgaccattttgagtctgcagGGCGAGGTTGCTGTGAACCGCCGTGTGGACACAAAATCATATACTTCTCTTCACACTCTTGTGAATGGCATGTTTCCATCCACATCCTCTTCTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG