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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaacaaacaactgatgtttttatcttcctctcctcttccccctcaacatccaaattcctgtttcctttttttcattctctctctctctctctctctctctctcgggggatggttgtagtgttggtgttgcaggttttttgctgaatttatttattggtcttatgtttcttatattccagGATGAGTACTCACAATGGGTTGTTGGAAGTCAGAGGAGTCTCCTTGAGGTAATGGCTGAGTTCCCTTCAGCGAAACCTCCCCTCGGTGTTTTCTTTGCAG

Basic information

species Vitis vinifera
transcript Vv18s0001g07630.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA04G10200.1 (Glycine max), 3'ss of exon 11
gtcaacaaacaactgatgtttttatcttcctctcctcttccccctcaacatccaaattcctgtttcctttttttcattctctctctctctctctctctctctctcgggggatggttgtagtgttggtgttgcaggttttttgctgaatttatttattggtcttatgtttcttatattccagGATGAGTACTCACAATGGGTTGTTGGAAGTCAGAGGAGTCTCCTTGAGGTAATGGCTGAGTTCCCTTCAGCGAAACCTCCCCTCGGTGTTTTCTTTGCAG
                                                                       |  ||   |   |    || | ||| ||| |     |  | |  || | | ||  | || |   ||| |       |||   |   | | ||   ||| |  | ||| |||||||||||||  ||||||| |||||||| ||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||| ||||| |
----------------------------------------------------------------------gtaacaaaattcttagtcctgtttctgtcttttgtttgcaa-gtatgaaattttcttcttccttttttctcttcctcttttggtgacgattttcaatttttggt-ttcaagGATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTGATGGCTGAGTTCCCATCAGCCAAACCTCCCCTTGGTGTTTTTTTTGCTG

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA06G10180.2 (Glycine max), 3'ss of exon 11
gtcaacaaacaactgatgtttttatcttcctctcctcttccccctcaacatccaaattcctgtttcctttttttcattctctctctctctctctctctctctctcgggggatggttgtagtgttggtgttgcaggttttttgctgaatttatttat--tggtcttatgtttcttatattccagGATGAGTACTCACAATGGGTTGTTGGAAGTCAGAGGAGTCTCCTTGAGGTAATGGCTGAGTTCCCTTCAGCGAAACCTCCCCTCGGTGTTTTCTTTGCAG
                                                                        |  |   |   |    || | ||| ||  | |  |    |   || | | ||  | || |   ||||   ||   | | || ||  || | ||   ||| |  | |||||||||||||||||  ||||||| |||||||| ||||| |||||||||||||| ||||||||||| || ||||| |||||||| || |||||||| ||||| |
-----------------------------------------------------------------------gtaaaaaattcttagtcctgtttctgtcattttttgcaagta--tgaaatttttttcttcccttttttccccttcctcttttgatgatgattttcaatttttggt-ttccagGATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTGATGGCTGAGTTTCCATCAGCCAAACCTCCACTAGGTGTTTTTTTTGCTG

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA14G36070.1 (Glycine max), 3'ss of exon 11
gtcaacaaacaactgatgtttttatcttcctctcctcttccccctcaacatccaaattcctgtttcctttttttcattctctctctctctctctctctctctctcgggggatggttgtagtgttggtgttgcaggttttttgctgaatttatttattggtcttatgtttcttatattccagGATGAGTACTCACAATGGGTTGTTGGAAGTCAGAGGAGTCTCCTTGAGGTAATGGCTGAGTTCCCTTCAGCGAAACCTCCCCTCGGTGTTTTCTTTGCAG
                                                                        || |   | |  ||     |    || | |||        | ||  |   | ||  ||     | |||| ||   || ||  | | || ||       || | |||||||||||||||||  ||||| | || ||||||||||| |||||||||||||||||||||||||| || ||||| ||||| || || ||||| || ||||| |
-----------------------------------------------------------------------gttgaaaattttgctaagagttatactgtttct--------gttttcaagttgggacttttctatcttttcctctgttaat--aatagttttgaaaaa-ttgttttccagGATGAGTACTCCAAATGGCTGGTGGGAAGTCAGAGAAGTCTCCTTGAGGTAATGGCTGAGTTTCCGTCAGCAAAACCACCGCTTGGTGTGTTTTTTGCTG

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA02G37850.1 (Glycine max), 3'ss of exon 11
gtcaacaaacaactgatgtttttatcttcctctcctcttccccctcaacatccaaattcctgtttcctttttttcattctctctctctctctctctctctctctcgggggatggttgtagtgttggtgttgcaggttttttgctgaatttatttattggtcttatgtttcttatattccagGATGAGTACTCACAATGGGTTGTTGGAAGTCAGAGGAGTCTCCTTGAGGTAATGGCTGAGTTCCCTTCAGCGAAACCTCCCCTCGGTGTTTTCTTTGCAG
                                                                                                                        ||    | ||  |  ||||   |||   ||| | || | | | |   || || | |||||||||||||||||  ||||| |  | ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || ||||| || ||||| |
----------------------------------------------------------------------------------------------------------------------gttgagacttttctatattttcctctg---ttaataatagttttgaaaatttttgttttccagGATGAGTACTCCAAATGGCTGCTGGGAAGTCAGAGAAGTCTCCTTGAGGTAATGGCTGAGTTCCCCTCAGCAAAACCACCGCTTGGTGTGTTTTTTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgcaggttttttgctgaatttatttattggtcttatgtttcttatattccagGATGAGTACTCACAATGGGTTGTTGGAAGTCAGAGGAGTCTCCTTGAGGTAATGGCTGAGTTCCCTTCAGCGAAACCTCCCCTCGGTGTTTTCTTTGCAG
                                      tgtttctt  CT-rich tract
         ttttttgctgaattta  TA-rich tract