Sequence
atgc intronic sequence ATGC exonic sequence...aaaaaatagtttatttgctttctttgctttcttgctctaatttagcagcagttgcacttctccatgtttaaacttgtttatttcattcctctgcatccagAATTCTAATGATGATGCAAACTGTGGCTTCTCACAAAGCTGAGAATCGAATGAGCTCTTCAGCTGTGTCTGCTTGCATGGCACCTTTACTTCTTCGTCCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g07310.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G019153_T01 (Zea mays), 3'ss of exon 13
aaaaaatagtttatttgctttctttgctttcttgctctaatttagcagcagttgcacttctccatgtttaaacttgtttatttcattcctctgcatccagAATTCTAATGATGATGCAAACTGTGGCTTCTCACAAAGCTGAGAATCGAATGAGCTCTTCAGCTGTGTCTGCTTGCATGGCACCTTTACTTCTTCGTCCC
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-----gtaattgattcatcattgtcactct-ttgccctgttgtggc----------tttatccgtattt-----tacttgtcttgctcctttat-ttcagAATTCTAATGATGATGCAAGTTGTAGCTTCTCACAAAAATGAAAACCTAATGAGCACTTCAGCCGTGGCGGCATGCATGGCACCCTTACTTCTTCGACCC
upper sequence: Vv18s0001g07310.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA06G09860.1 (Glycine max), 3'ss of exon 13
-aaaaaatagtttatttgctttctttgctttcttgctct----aatttagcagcagttgcacttctccatgtttaaacttgtttatttcattcctctgcatccagAATTCTAATGATGATGCAAACTGTGGCTTCTCACAAAGCTGAGAATCGAATGAGCTCTTCAGCTGTGTCTGCTTGCATGGCACCTTTACTTCTTCGTCCC
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ggaactgatttttattctgttcaatttttcttttgcaccacacatttctactttagata-atgttttgatgatgtaatatatttatttcattcttgtaca----gAATACTTATGATGATGCAAACTGTGGCTTCACGCAAAGCTGTGAATAGAATGAGCTCCTCAGCTGTGGCAGCTTGCATGGCGCCTTTACTTCTTCGCCCC
upper sequence: Vv18s0001g07310.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA04G09780.1 (Glycine max), 3'ss of exon 10
-aaaaaatagtttatttgctttctttgctttcttgctcta---atttagcagcagttgcacttctccatgtttaaacttgtttatttcattcctctgcatccagAATTCTAATGATGATGCAAACTGTGGCTTCTCACAAAGCTGAGAATCGAATGAGCTCTTCAGCTGTGTCTGCTTGCATGGCACCTTTACTTCTTCGTCCC
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tggaacagattttgttttgttcagtttttcttttgcaccatacatttccattttagatcatgttttgatgatgtaatatatttatttcattcttgtaca----gAATACTTATGATGATGCAAACTGTGGCTTCACGCAAAGCTGTGAATAGAATGAGCTCCTCAGCTGTGGCAGCTTGCATGGCGCCTTTACTTCTTCGCCCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagcagttgcacttctccatgtttaaacttgtttatttcattcctctgcatccagAATTCTAATGATGATGCAAACTGTGGCTTCTCACAAAGCTGAGAATCGAATGAGCTCTTCAGCTGTGTCTGCTTGCATGGCACCTTTACTTCTTCGTCCC
tttatttcattcctct CT-rich tract
tttaaacttgtttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaaaatagtttatttgctttctttgctttcttgctctaatttagcagcagttgcacttctccatgtttaaacttgtttatttcattcctctgcatccagAATTCTAATGATGATGCAAACTGTGGCTTCTCACAAAGCTGAGAATCGAATGAGCTCTTCAGCTGTGTCTGCTTGCATGGCACCTTTACTTCTTCGTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
aaaaaat
- - - - - - - -tgctttc
- - - - - - - - - - - - - - - cttgctc
- - - - - - - - - - - - - - - - - - - - - -agcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctcc