1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcaaaagtaaaacatgttacagatgctccgataattgtgtttatgatacttaatattttaccaatctcagtattaccaactggtgaaatgactgtttcagGGAAGAATCGATTTGATTGAGCTTGTTGCTGAGCAGATGCACCAAGAGAAAATCCAGCCCGATCCATCAACCTGCTACTATGTGTTCTCTTCCTATGTGG
species | Vitis vinifera |
transcript | Vv18s0001g00070.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CACCTGATGTACTGTTATATAACACTATTCTTCAGAAAGCATGTCTAAAG GGAAGAATCGATTTGATTGAGCTTGTTGCTGAGCAGATGCACCAAGAGAAAEST: gi|351012988|gb|FQ433715.1|FQ433715
genomic: CATCTGATGTCCTGTTATATAACACTATTCTTCAGAAAGCATGTCTAAAGgtaatggttt ... actgtttcagGGAAGAATCGATTTGATTGAGCTTGTTGCTGAGCAGATGCACCAAGAGAAA
EST: CACCTGATGTACTGTTATATAACACTATTCTTCAGAAAGCATGTCTAAAG GGAAGAATCGATTTGATTGAGCTTGTTGCTGAGCAGATGCACCAAGAGAAA
genomic: CATCTGATGTCCTGTTATATAACACTATTCTTCAGAAAGCATGTCTAAAGgtaatggttt ... actgtttcagGGAAGAATCGATTTGATTGAGCTTGTTGCTGAGCAGATGCACCAAGAGAAA
atacttaatattttaccaatctcagtattaccaactggtgaaatgactgtttcagGGAAGAATCGATTTGATTGAGCTTGTTGCTGAGCAGATGCACCAAGAGAAAATCCAGCCCGATCCATCAACCTGCTACTATGTGTTCTCTTCCTATGTGG
acttaat putative branch site (score: 4)
ctgtttc putative PPT
taatattttaccaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaaagtaaaacatgttacagatgctccgataattgtgtttatgatacttaatattttaccaatctcagtattaccaactggtgaaatgactgtttcagGGAAGAATCGATTTGATTGAGCTTGTTGCTGAGCAGATGCACCAAGAGAAAATCCAGCCCGATCCATCAACCTGCTACTATGTGTTCTCTTCCTATGTGG
- - - gtaaaac
- - - - - - - - - -cagatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accaact