Sequence
atgc intronic sequence ATGC exonic sequence...tttcatttatgaaaaagatcaagactttgatttcatttgtgaaaaagatcaagactttgattttatttatttatttattttcttttattgtttttttcagGAGATGTAATGATGAGCTTATTCTTGAATGAGCTCTATGGATTCCAATTAGATACTCACCGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA04G36770.1 (Glycine max), 3'ss of exon 11
-tttcatttatgaaaa-agatcaagactttgatttcatttgtgaaaaagatcaagactttgattttatttatttatttattttcttttattgtttttttcagGAGATGTAATGATGAGCTTATTCTTGAATGAGCTCTATGGATTCCAATTAGATACTCACCGCTG
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aaacaattaataagatcagacagtcagctcaaattctcttttgagggggtgtattaaatggtttatgcttagtatcctaattgcaccaacaactgtg--cagGTGATGTAATGATGAGCTTGTTTTTGAATGAGCTTTATGGATTTCAGTTAGACACCAATCGCTG
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA06G18170.1 (Glycine max), 3'ss of exon 11
tttcatttatgaaa-aagatcaagactttgatttcatttgtgaaaaagatcaagactttgattttatttatt---tatttattttctt--ttattgtt---tttttcagGAGATGTAATGATGAGCTTATTCTTGAATGAGCTCTATGGATTCCAATTAGATACTCACCGCTG
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---------taagatgagacagtcagctcaaattctcttttgaaggggtgtatttcattgtttatgcttgttgtgaggttagtatcctaattgcagcaacactgtgcagTTGATGTAATGATGAGCTTGTTTTTGAATGAGCTTTATGGCTTTCAGTTAGACACCAATCGCTG
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT5G50310.1 (Arabidopsis thaliana), 3'ss of exon 11
tttcatttatgaaaaagatcaagactttgatttcatttgtgaaaaagatcaagactttgattttatttatttatttattttcttttattgttttttt-cagGAGATGTAATGATGAGCTTATTCTTGAATGAGCTCTATGGATTCCAATTAGATACTCACCGCTG
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----------gtcaggaaatggtatactagtatcatttttgttta----------tcagaatctgtaagctgaattattgacatctgtaattttttggcagGTGATGTAATGATGAGTTTATTCTTAAATGAACTCTATGGCTTCCAGTTAGATAATCGTCGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agatcaagactttgattttatttatttatttattttcttttattgtttttttcagGAGATGTAATGATGAGCTTATTCTTGAATGAGCTCTATGGATTCCAATTAGATACTCACCGCTG
ctttgat putative branch site (score: 5)
tttatttattttcttt putative PPT
attttatttatttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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tttcatttatgaaaaagatcaagactttgatttcatttgtgaaaaagatcaagactttgattttatttatttatttattttcttttattgtttttttcagGAGATGTAATGATGAGCTTATTCTTGAATGAGCTCTATGGATTCCAATTAGATACTCACCGCTG
- - - - - -aaaaaga