Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgtacattgattgatttggttcattcataccaagttttgtgagcttgtctaaaggttctttatttgtattttggtcatgtgtttgacaaatctatatatgcaccttttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTGTTGCAAGGTCTTCTTAGATATGACCCTTCAGACCGATTGACAGCCCTTG

Basic information

species Vitis vinifera
transcript Vv17s0000g09500.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA04G36360.1 (Glycine max), 3'ss of exon 10
gtttgtgtacattgattgatttggttcattcataccaagttttgtgagcttgtctaaaggttctttatttgtattttggtcatgtgt-ttgacaaatc-tatatatgcaccttttttg---------gcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTGTTGCAAGGTCTTCTTAGATATGACCCTTCAGACCGATTGACAGCCCTTG
||||||   ||     ||    ||   |    || || | |||  ||  ||    || |   |  | ||     |   ||  |   | ||| |   ||  || ||  || |||||||          ||||||||| |||||||||||||| || ||||| ||||||||||| |||||||| ||||| || || |||||||||||||| |  ||  || | |||||    |
gtttgttctcaa-atctgtcacggaaaaaatttatcatgatttcagattttactaaatgaagcaatgttgactgtagagtagttcatgttggcttctcacatttactcaacttttttccaaataattgcagAACCTTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTTTTGCAGGGGCTACTTAGATATGACCCCTTTGAAAGACTTACAGCTAGGG

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA06G18530.1 (Glycine max), 3'ss of exon 10
gtttgtgtacattgattgatttggttcattcataccaagttttgtgagcttgtctaaaggttctttatttgtattttggtcatgtgtttgacaaatctatatatgcaccttttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTGTTGCAAGGTCTTCTTAGATATGACCCTTCAGACCGATTGACAGCCCTTG
||||||   ||     ||   |||   ||   ||  | | |||   |   | ||| |    | ||  |   |       |  ||  ||     ||  ||  | | |     |  | ||||||| | |||||||||||||| || ||||| ||||||||||| |||||||| ||||| || || |||||||||||||| |  ||  || | |||||    |
gtttgttctcaa-atctgtcatggaaaatatttattatgattttgaatgctttctga----ttttactaaatgaagcaatgttgacttcacttaacgtaatttttctttaataattgcagAACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTTTTGCAGGGGCTACTTAGATATGACCCCTTTGAAAGACTTACAGCTAGGG

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA17G13440.1 (Glycine max), 3'ss of exon 9
gtttgtgtacattgattgatttggttcattcataccaagttttgtgagcttgtctaaaggttctttatttgtattttggtcatgtgtttgacaaatctatatatgcaccttttttg-gcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTGTTGCAAGGTCTTCTTAGATATGACCCTTCAGACCGATTGACAGCCCTTG
                   |||| || ||| |      | ||| |||  ||  ||| | |     | | | |||| |  |  ||  |||     | |  | |     ||   | |  |||||||||  ||||||||||||| || ||||| ||||| ||||| |||||||| ||||| ||  | |||||||||||||| || ||  || | ||||||   |
------------------gtttgtttaattaagtatttgctttctga-tttaactatatgaatgatttatatattattatattgactttagttgacccttttccctcccaaatatatgcagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTCTTGCAGGGGTTACTTAGATATGACCCCTCTGAAAGACTTACAGCCAAGG

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA05G02740.2 (Glycine max), 3'ss of exon 9
gtttgtgtacattgattgatttggttcattcataccaagttttgtgagcttgtctaaaggttctttatttgtattttggtcatgtgtttgacaaatctatatatgcaccttttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTGTTGCAAGGTCTTCTTAGATATGACCCTTCAGACCGATTGACAGCCCTTG
      ||   ||   | ||||| ||   | ||   ||  | | | |     | | || | | | ||||   | ||| |||     |||  |    | | ||||            | |||||||  ||||||||||||| || ||||| ||||| ||||| |||||||| ||||| ||  | |||||||||||||| || ||  || | ||||||   |
------gttggtttgattatttgcttt-ctgattttaa-ctatataaagcaatttgaatggtttatattg--actttagtcg-acattttcccctcccaaatatat----------gtagAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTCTTGCAGGGGTTACTTAGATATGACCCCTCTGAAAGACTTACAGCCAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30133828|gb|CB919167.1|CB919167
EST:     CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAG                         AACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
genomic: CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAGgtttgtgtac ... tttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
EST: gi|110373955|gb|EC938383.1|EC938383
EST:     CAACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAG                         AACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
genomic: CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAGgtttgtgtac ... tttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
EST: gi|110362754|gb|EC926306.1|EC926306
EST:     CAACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAG                         AACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
genomic: CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAGgtttgtgtac ... tttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
EST: gi|71889805|gb|DT038860.1|DT038860
EST:     CAACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAG                         AACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
genomic: CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAGgtttgtgtac ... tttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
EST: gi|161709978|gb|FC059766.1|FC059766
EST:     CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAG                         AACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
genomic: CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAGgtttgtgtac ... tttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
EST: gi|30255726|gb|CB971858.1|CB971858
EST:     CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAG                         AACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
genomic: CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAGgtttgtgtac ... tttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttgtattttggtcatgtgtttgacaaatctatatatgcaccttttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTGTTGCAAGGTCTTCTTAGATATGACCCTTCAGACCGATTGACAGCCCTTG
                    gtttgac  putative branch site (score: 4)
                                        cacctttttt  putative PPT
                         acaaatctatatat  TA-rich tract