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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattgactttgatgttattatgctgatatgtttgtgatctgatactgattttatttcttacacttcattggtaacatctcagTGAGGGTTCCTTGAAATTGGCTTCTGAAGGAACTGAAATAGGGAGAACTCTTCCTTATACTTCATCAGCCATGCATAACACCTTTGCTTTCAAAATTGAA

Basic information

species Vitis vinifera
transcript Vv17s0000g01200.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110363858|gb|EC927482.1|EC927482
EST:     TGGGACTCAGCCATGGCATTAGGAACTGATGATGACGAAGAAACACGGAG                         TGAGGGTTCCTTGAAATTGGCTTCTGAAGGAACTGAAATAGGGAGAACTCT
genomic: TGGGACTCAGCCATGGCATTAGGAACTGATGATGACGAAGAAACACGGAGgttattgact ... aacatctcagTGAGGGTTCCTTGAAATTGGCTTCTGAAGGAACTGAAATAGGGAGAACTCT
EST: gi|71858444|gb|DT007499.1|DT007499
EST:     TGGGACTCAGCCATGGCATTAGGAACTGATGATGACGAAGAAACACGGAG                         TGAGGGTTCCTTGAAATTGGCTTCTGAAGGAACTGAAATAGGGAGAACTCT
genomic: TGGGACTCAGCCATGGCATTAGGAACTGATGATGACGAAGAAACACGGAGgttattgact ... aacatctcagTGAGGGTTCCTTGAAATTGGCTTCTGAAGGAACTGAAATAGGGAGAACTCT
EST: gi|110386824|gb|EC951452.1|EC951452
EST:     TGGGACTCAGCCATGGCATTAGGAACTGATGATGACGAAGAAACACGGAG                         TGAGGGTTCCTTGAAATTGGCTTCTGAAGGAACTGAAATAGGGAGAACTCT
genomic: TGGGACTCAGCCATGGCATTAGGAACTGATGATGACGAAGAAACACGGAGgttattgact ... aacatctcagTGAGGGTTCCTTGAAATTGGCTTCTGAAGGAACTGAAATAGGGAGAACTCT
EST: gi|71889831|gb|DT038886.1|DT038886
EST:     TGGGACTCAGCCATGGCATTAGGAACTGATGATGACGAAGAAACACGGAG                         TGAGGGTTCCTTGAAATTGGCTTCTGAAGGAACTGAAATAGGGAGAACTCT
genomic: TGGGACTCAGCCATGGCATTAGGAACTGATGATGACGAAGAAACACGGAGgttattgact ... aacatctcagTGAGGGTTCCTTGAAATTGGCTTCTGAAGGAACTGAAATAGGGAGAACTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttgtgatctgatactgattttatttcttacacttcattggtaacatctcagTGAGGGTTCCTTGAAATTGGCTTCTGAAGGAACTGAAATAGGGAGAACTCTTCCTTATACTTCATCAGCCATGCATAACACCTTTGCTTTCAAAATTGAA
                                         tggtaac  putative branch site (score: 2)
              atactgattttattt  TA-rich tract