1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acttgtatcactcgtattttttagaataacttatattctacatttgtgctaagttttacatttgtaaataggattaaggttgtttatatgttgtatgcagGAAGCAAAGGTACTGTGGGAGAGAATACAGGAACGGCAAGGACTGAACAAGTGGCGCCCAGATCTAGAAGAAGAGTATGAAGACAAAGAGGGCAACATCT
species | Vitis vinifera |
transcript | Vv16s0098g00320.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCCTCGGCATTCCCAATACCAAAAACTTCAATGAAATCACATCAATTAAG GAAGCAAAGGTACTGTGGGAGAGAATACAGGAACGGCAAGGACTGAACAAGEST: gi|161713801|gb|FC063789.1|FC063789
genomic: GCCTCGGCATTCCCAATACCAAAAACTTCAATGAAATCACATCAATTAAGgtatgctctt ... ttgtatgcagGAAGCAAAGGTACTGTGGGAGAGAATACAGGAACGGCAAGGACTGAACAAG
EST: GCCTCGGCATTCC-AATACCAAAAACTTCA-TGAAATCACATCA-TTAAG GAAGCAA-GGTACTGEST: gi|349829520|gb|FQ420052.1|FQ420052
genomic: GCCTCGGCATTCCCAATACCAAAAACTTCAATGAAATCACATCAATTAAGgtatgctctt ... ttgtatgcagGAAGCAAAGGTACTG
EST: GCCTCGGCATTCCCAATACCAAAAACTTCAATGAAATCACATCAATTAAG GAAGCAAAGGTACTGTGGGAGAGAATACAGGAACGGCAAGGACTGAACAAG
genomic: GCCTCGGCATTCCCAATACCAAAAACTTCAATGAAATCACATCAATTAAGgtatgctctt ... ttgtatgcagGAAGCAAAGGTACTGTGGGAGAGAATACAGGAACGGCAAGGACTGAACAAG
gtgctaagttttacatttgtaaataggattaaggttgtttatatgttgtatgcagGAAGCAAAGGTACTGTGGGAGAGAATACAGGAACGGCAAGGACTGAACAAGTGGCGCCCAGATCTAGAAGAAGAGTATGAAGACAAAGAGGGCAACATCT
ttttacatttgtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttgtatcactcgtattttttagaataacttatattctacatttgtgctaagttttacatttgtaaataggattaaggttgtttatatgttgtatgcagGAAGCAAAGGTACTGTGGGAGAGAATACAGGAACGGCAAGGACTGAACAAGTGGCGCCCAGATCTAGAAGAAGAGTATGAAGACAAAGAGGGCAACATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - -gaataac
- - - - - - - - - - - - - - - - - - - - - tttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatagga