Sequence
atgc intronic sequence ATGC exonic sequence...gtcttcttgggataatttctaaattttctcatcaatttattctgaattaaattttttctgcttttggaaagagtgaaatttaacaaaaatttgcttctagATTGTTGTTCCAAATCCAGATGTGAGGGGCCGTCAAGAGATATTGGAGCTCTATCTGCAGGATAAACCATTGTCTGATGATGTAGATGTCAAAGCAATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G004040_T01 (Zea mays), 3'ss of exon 11
----gtcttcttgggataatttctaaattttctcatcaa-tttattctgaattaaattttttctgcttttggaaagag---tga--aatttaacaaaaatttgctt-ctagATTGTTGTTCCAAATCCAGATGTGAGGGGCCGTCAAGAGATATTGGAGCTCTATCTGCAGGATAAACCATTGTCTGATGATGTAGATGTCAAAGCAATTG
||| ||| | ||| || | | | || || | ||| | | | | | | | || ||| | ||| |||| | ||| || |||||||||||| |||| |||||||||| |||| || |||||||| ||||||||||| |||| ||||| ||| || | ||||||||||| |||| |||||||
gtaagtcgtctgagcatatgttttcctgatcttgatgaagtgtatcacctaaaagttctatccagtgagtgcaaaaaagtttgattaattctgttgagctttctttactagATTGTTGTCCCAAGTCCAGATGTGCGGGGTCGCCAAGAGATTCTGGAGCTCTATTTGCAAGATAAGCCAGTGGCAAATGATGTAGATATCAATGCAATTG
upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G156069_T01 (Zea mays), 3'ss of exon 11
----gtcttcttgggata----atttctaaattttctcatcaatttattctgaattaaattttttctgcttttggaaagagtgaaatttaacaaaaatttgcttctagATTGTTGTTCCAAATCCAGATGTGAGGGGCCGTCAAGAGATATTGGAGCTCTATCTGCAGGATAAACCATTGTCTGATGATGTAGATGTCAAAGCAATTG
||| || | ||| |||| || || | | ||| || || | | ||| || | || | | || ||||||||| || |||| |||||||||| |||| || |||||||| ||||||||||| |||| ||||| ||| || | ||||||||||| |||| |||||||
gtaagtcacctgagcatatacggtttcctgatcttgatga-agtgtatcacctatcaagtgcagtgcaaattttttttgatt-aattccgttgagctttcttcactagATTGTCGTCCCAAGTCCAGATGTGCGGGGTCGCCAAGAGATTCTGGAGCTCTATTTGCAAGATAAGCCAGTGGCAAATGATGTAGATATCAATGCAATTG
upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA14G29810.1 (Glycine max), 3'ss of exon 3
gtcttcttgggataatttctaaattttctcatcaatttattctgaattaaattttttct--gcttttggaaagagtgaaatttaacaaaaatttgcttctagATTGTTGTTCCAAATCCAGATGTGAGGGGCCGTCAAGAGATATTGGAGCTCTATCTGCAGGATAAACCATTGTCTGATGATGTAGATGTCAAAGCAATTG
| | | | || || | || | | | || | ||||| | | | ||| ||||||| | | |||||||||| ||||||||||||||| | || || ||||| |||||||| ||||||||||| |||||||| | |||||||||||||||| ||||||||||
-acaaactaccttttgtactgaaacctggaatta-taagtagtggagtaaatgcccacataatatattgaagatacagggactaacaaattcccaataccagATTGTTGTACCAAATCCAGATGTGCGAGGTCGGCAAGAAATATTGGAACTCTATCTGCAAGATAAACCTGTAGCTGATGATGTAGATGTTAAAGCAATTG
upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA13G08160.1 (Glycine max), 3'ss of exon 11
----------------------------gtcttc--ttgggataatttctaaattttctcatcaattta---ttctgaattaaattttttctgcttttggaaagagtgaaatttaacaaaaatttgcttctagATTGTTGTTCCAAATCCAGATGTGAGGGGCCGTCAAGAGATATTGGAGCTCTATCTGCAGGATAAACCATTGTCTGATGATGTAGATGTCAAAGCAATTG
|| | || || | || || | | ||| | | ||| | ||| | | | | ||| | ||||||| | | | |||||||||| ||||||||||||||| | || || ||||| |||||||| ||||||||||| |||||||
agaataaatattaaaaatgcgtttaattatcaaccattaaaattacttgacaacctaacctggaatcaaaagtactggagtaagtgcccacataatatagAAGATACAGAGACTAACAAATTGCCGATACCAGATTGTTGTACCAAATCCAGATGTGCGAGGTCGGCAAGAAATATTGGAACTCTATCTGCAAGATAAAC---------------------------------
upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA06G13140.1 (Glycine max), 3'ss of exon 11
gtcttcttgggataatttctaaattttctcatcaatttattc-tgaat----taaattttttctgcttttgg-aaagagtgaaatttaacaaa--aatttgcttctagATTGTTGTTCCAAATCCAGATGTGAGGGGCCGTCAAGAGATATTGGAGCTCTATCTGCAGGATAAACCATTGTCTGATGATGTAGATGTCAAAGCAATTG
| ||| || ||||| | ||| || | |||| ||||| | | | | | | ||||| | ||| | || | || || || ||| |||||||||| |||||||||||| | | || || ||||| ||||||||||| || || || |||||||||||| |||||||| ||||| | ||| ||||||
------tgaacctaactttaaaattatatca--aactaattcctgaatgctctcattgctatgtaattttgatatagaatataagtagactaaccaacccaattccagATTGTTGTACCAAATCCAGATTTACGTGGTCGACAAGAAATATTGGAGCTTTACCTTCAAGATAAACCATTGGCTGATGATATAGATATTAAATCAATTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attaaattttttctgcttttggaaagagtgaaatttaacaaaaatttgcttctagATTGTTGTTCCAAATCCAGATGTGAGGGGCCGTCAAGAGATATTGGAGCTCTATCTGCAGGATAAACCATTGTCTGATGATGTAGATGTCAAAGCAATTG
atttaac putative branch site (score: 3)
tttgcttct putative PPT
agtgaaatttaacaaa TA-rich tract
Putative cis-regulatory sequences
| atgc | intron | ATGC | exonic elements by Pertea et al. |
| ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcttcttgggataatttctaaattttctcatcaatttattctgaattaaattttttctgcttttggaaagagtgaaatttaacaaaaatttgcttctagATTGTTGTTCCAAATCCAGATGTGAGGGGCCGTCAAGAGATATTGGAGCTCTATCTGCAGGATAAACCATTGTCTGATGATGTAGATGTCAAAGCAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- -ttcttgg
- - - - - - - - - - - - - -ctcatca
- - - - - - - - - - - - - - - - - - - - - - aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa
