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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttaggaatcttcatcctgttttccatttgagctttgatatcctactgttgattgaaattctgaaaacactgggttgcttcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCATGTGACTGTACTTCTTGAGGCTGGGAAACCAATCTACACACCATC

Basic information

species Vitis vinifera
transcript Vv16s0022g02110.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02110.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA20G29060.1 (Glycine max), 3'ss of exon 11
----gtaagttc------ttaggaatcttcatcctgttttccatttgagc-tttgatatcct-----actgttgattgaaattctgaaaacactgggttgcttcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCATGTGACTGTACTTCTTGAGGCTGGGAAACCAATCTACACACCATC
    || | ||       || |   | ||| | |   ||| | ||| |   | | | | |||       | ||  |   |  |   |||        |    |  | ||||||||||||||||  |||||   |||||||||||  | ||| |||| ||  |||| ||  ||||||||||| |||| |||||||||||||| | |||
gtgagtcaattttctccatttgtgtttttcttgcaaattttcttttaaatatattaaaccctcatttgttatttctctgacctggtaaattgtcttatcatgtaatatgcagGGTTATACTGAAGTAAAGCAAAGATCACTTCTAACTTCCATGGAGAACTATGTTACATTACTTCTTGAGACTGGCAAACCAATCTACACCCAATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351046770|gb|FQ454380.1|FQ454380
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|349818664|gb|FQ403498.1|FQ403498
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|351040229|gb|FQ425315.1|FQ425315
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|352790432|gb|FQ478072.1|FQ478072
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|351048608|gb|FQ448882.1|FQ448882
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|351033398|gb|FQ462049.1|FQ462049
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|161720145|gb|FC066753.1|FC066753
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|161709071|gb|FC058368.1|FC058368
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCTAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|351039800|gb|FQ464838.1|FQ464838
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|349809274|gb|FQ399048.1|FQ399048
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|352798464|gb|FQ480489.1|FQ480489
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|110391302|gb|EC956267.1|EC956267
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|349812243|gb|FQ411838.1|FQ411838
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|351056075|gb|FQ453536.1|FQ453536
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|71870308|gb|DT019363.1|DT019363
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|351055609|gb|FQ452074.1|FQ452074
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|30253071|gb|CB970622.1|CB970622
EST:     CCGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|351012917|gb|FQ430480.1|FQ430480
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|37184768|gb|CF604122.1|CF604122
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|110690637|gb|EE067971.1|EE067971
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|351052845|gb|FQ456573.1|FQ456573
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|351035558|gb|FQ463403.1|FQ463403
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
EST: gi|349807331|gb|FQ401323.1|FQ401323
EST:     CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCT                         GGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT
genomic: CTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTgtaagttctt ... tcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatatcctactgttgattgaaattctgaaaacactgggttgcttcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCATGTGACTGTACTTCTTGAGGCTGGGAAACCAATCTACACACCATC
            tgttgat  putative branch site (score: 4)
                                        ttgcttctt  putative PPT
                 attgaaatt  TA-rich tract