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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttgaaattttagtgatacatgctactgtttctttcttatcttgtgccttgatgcattggattgttaatttagGTACCTCCATGGCAACAAGCTTACTGGACCAATTCCACCAGAACTTGGCAATATGTCAAAGCTTAGCTATTT

Basic information

species Vitis vinifera
transcript Vv16s0022g02030.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA16G32830.1 (Glycine max), 3'ss of exon 12
----gtgagttttgaaattttagtgatacatgctactgtttctttcttatcttg---tgccttgatgcattggattgtta--atttagGTACCTCCATGGCAACAAGCTTACTGGACCAATTCCACCAGAACTTGGCAATATGTCAAAGCTTAGCTATTT
    ||    ||| | |   |  | |||  |  |  |  |  || ||| ||||    ||  |   | | || | || |||  |||||||||||| ||||| |||| ||||||||||||||| || || |||||||||||||||||||  || |||||  |
gtaagtataatttcacacaatgataataactcttgttaatcattacttgtcttagtttgtttcttttcttttgttttttatcatttagGTACCTTCATGGAAACATGCTTACTGGACCAATACCTCCCGAACTTGGCAATATGTCAAGACTAAGCTACCT

upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA09G27950.1 (Glycine max), 3'ss of exon 11
------gtgagttt-tgaaattttagtgatacatgcta-ctgtttctt-tctta--tcttgtgccttgatgcattggattgttaatttagGTACCTCCATGGCAACAAGCTTACTGGACCAATTCCACCAGAACTTGGCAATATGTCAAAGCTTAGCTATTT
       | | ||     |||  || | |  | ||  | |  || ||| |||||  | || |   ||  |  |||   || | | ||||||||||| ||||| |||| |||||||||| |||| || || |||||||||||||||||||  || |||||  |
gtaagtataatttcacacaatgataataactcttgtaaaccattacttgtcttagtttttttcttttcttttatttttttatgattttagGTACCTTCATGGAAACATGCTTACTGGAACAATACCTCCCGAACTTGGCAATATGTCAAGACTAAGCTACCT

upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA10G38730.1 (Glycine max), 3'ss of exon 12
gtgagttttgaaattttagtgatacatgctactgtttctttcttatcttgtgccttgatgcattggattgttaatttagGTACCTCCATGGCAACAAGCTTACTGGACCAATTCCACCAGAACTTGGCAATATGTCAAAGCTTAGCTATTT
||||||   ||  ||    |||   |  || || ||  |    |  |  ||  | |||    ||  |||    | |||||||||| ||||| |||| |||||| || || || || || ||||||||||||||||| || || |||||  |
gtgagtgc-gactttgctttgacttaaactccttttagtcatattgcaagttgcctgacaacttcaatt----aattagGTACCTTCATGGAAACATGCTTACGGGTCCTATACCTCCTGAACTTGGCAATATGTCCAAACTGAGCTACCT

upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT5G07180.1 (Arabidopsis thaliana), 3'ss of exon 12
gtgagtt--ttgaaattttagtgatacatgctactgtttctttcttatctt---gtgccttgatg-cattggattgttaatttagGTACCTCCATGGCAACAAGCTTACTGGACCAATTCCACCAGAACTTGGCAATATGTCAAAGCTTAGCTATTT
||||||   ||    |||      |   ||  |    |   |||  |||||    |   | |||    |    |  | ||  |||||| ||||||||||||||||| ||||||| ||| ||||| || || ||||||||||||   || ||||||||
gtgagtccctttttttttcttccctctgtgtcatgcatatgttcagatcttcacatatatggataatgtcttttcttgaaaatagGTATCTCCATGGCAACAAGCTCACTGGACAAATCCCACCCGAGCTAGGCAATATGTCACGACTCAGCTATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgctactgtttctttcttatcttgtgccttgatgcattggattgttaatttagGTACCTCCATGGCAACAAGCTTACTGGACCAATTCCACCAGAACTTGGCAATATGTCAAAGCTTAGCTATTT
                                            tgttaat  putative branch site (score: 3)
                                          attgttaattta  TA-rich tract