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...ccatcacttcagaaactaaattaggatttcctatcaatattttgagcagaaaatccttgtaatttgaagcacctaactgaataataaccatctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACAAATCATTTGTGAATGATTACCCAATTGTTTCAATTGAAGACCCATTTG
species | Vitis vinifera |
transcript | Vv16s0022g01770.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GACCTATGACTTGAATTTCAAGGAAGAG AACAATG-TGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|22009325|gb|BQ794359.1|BQ794359
genomic: GACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: TTCAAGGAAGAG AACAATGATGGATCAC-AAAAATATCTGGAGACAGCTTGAAGAATG-TTACEST: gi|110716823|gb|EE092142.1|EE092142
genomic: TTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACGTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|27586582|gb|CB009277.1|CB009277
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|30297237|gb|CB974031.1|CB974031
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: GAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|156732544|gb|EV236665.1|EV236665
genomic: GAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACGTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACGGCTTGAAGAATGTTTACEST: gi|26267083|gb|CA818146.1|CA818146
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: TAAGACCTATGAC-TGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCCTGAAGAATGTTTACEST: gi|30297383|gb|CB974177.1|CB974177
genomic: TAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: TGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|110720665|gb|EE096796.1|EE096796
genomic: TGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|161719189|gb|FC069366.1|FC069366
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAG CACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|110422151|gb|EC988464.1|EC988464
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACTTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|27585372|gb|CB008067.1|CB008067
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|110405512|gb|EC971053.1|EC971053
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACGTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|110700865|gb|EE077893.1|EE077893
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|27584827|gb|CB007522.1|CB007522
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|110715456|gb|EE093529.1|EE093529
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|30297175|gb|CB973969.1|CB973969
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|30297322|gb|CB974116.1|CB974116
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|30251837|gb|CB969570.1|CB969570
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: ATAAGACCTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|30125536|gb|CB910875.1|CB910875
genomic: ATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: ATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|71866289|gb|DT015344.1|DT015344
genomic: ATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: GACCTATGACTTGAATTTCAAGGAAGAG AACAATG-TGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|30301049|gb|CB977843.1|CB977843
genomic: GACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|30305158|gb|CB981952.1|CB981952
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: TATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|110418381|gb|EC984529.1|EC984529
genomic: TATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACGTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|26265143|gb|CA816206.1|CA816206
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: GATAAGACCTATGAC-TGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCCTGAAGAATGTTTCCEST: gi|110686170|gb|EE063531.1|EE063531
genomic: GATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|110358476|gb|EC922715.1|EC922715
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: ACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|161719251|gb|FC068252.1|FC068252
genomic: ACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|110377559|gb|EC942632.1|EC942632
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: ATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACEST: gi|110362047|gb|EC925554.1|EC925554
genomic: ATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
EST: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAG AACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
genomic: AGTTCTATGATAACAAGGATAAGACCTATGACTTGAATTTCAAGGAAGAGgtagcaattg ... tctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTAC
gcagaaaatccttgtaatttgaagcacctaactgaataataaccatctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACAAATCATTTGTGAATGATTACCCAATTGTTTCAATTGAAGACCCATTTG
taataac putative branch site (score: 1)
taactgaataataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatcacttcagaaactaaattaggatttcctatcaatattttgagcagaaaatccttgtaatttgaagcacctaactgaataataaccatctgctgcagAACAATGATGGATCACAAAAAATATCTGGAGACAGCTTGAAGAATGTTTACAAATCATTTGTGAATGATTACCCAATTGTTTCAATTGAAGACCCATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
ccatcac
- - - - - - aaactaa
- - - - - - - - - - - - - - -cctatca
- - - - - - - - - - - - - - - - - - - - - - - cagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataacc