1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaaccaaacacgctccatctctttctagaatgttaccattaccatatttctttctgcaattagatggagattacagacttctaaggatttggtaccatttatgaatatattcggttgcagTTTACCATCCCAGGCAGCAGGCATGCAGTGCACCATGCAAGCCTCTTGCAAAAGGCAGTAGCATTGCGGACCCTGCGTGCTGCAGCTGCAGCCGCAACTG
species | Vitis vinifera |
transcript | Vv16s0013g01430.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGAACCCTTCTCCAGTGCTCAAGTCATGTGCTGCTTTTGCTCTTCTCCAG TTTACCATCCCAGGCAGCAGGCATGCAGTGCACCATGCAAGCCTCTTGCAAEST: gi|110411520|gb|EC977237.1|EC977237
genomic: AGAACCCTTCTCCAGTTCTCAAGTCATGTGCTGCTTTTGCTCTTCTCCAGgtaaaccaaa ... tcggttgcagTTTACCATCCCAGGCAGCAGGCATGCAGTGCACCATGCAAGCCTCTTGCAA
EST: AGAACCCTTCTCCAGTGCTCAAGTCATGTGCTGCTTTTGCTCTTCTCCAG TTTACCATCCCAGGCAGCAGGCATGCAGTGCACCATGCAAGCCTCTTGCAAEST: gi|110360399|gb|EC923470.1|EC923470
genomic: AGAACCCTTCTCCAGTTCTCAAGTCATGTGCTGCTTTTGCTCTTCTCCAGgtaaaccaaa ... tcggttgcagTTTACCATCCCAGGCAGCAGGCATGCAGTGCACCATGCAAGCCTCTTGCAA
EST: AGAACCCTTCTCCAGTGCTCAAGTCATGTGCTGCTTTTGCTCTTCTCCAG TTTACCATCCCAGGCAGCAGGCATGCAGTGCACCATGCAAGCCTCTTGCAA
genomic: AGAACCCTTCTCCAGTTCTCAAGTCATGTGCTGCTTTTGCTCTTCTCCAGgtaaaccaaa ... tcggttgcagTTTACCATCCCAGGCAGCAGGCATGCAGTGCACCATGCAAGCCTCTTGCAA
ggagattacagacttctaaggatttggtaccatttatgaatatattcggttgcagTTTACCATCCCAGGCAGCAGGCATGCAGTGCACCATGCAAGCCTCTTGCAAAAGGCAGTAGCATTGCGGACCCTGCGTGCTGCAGCTGCAGCCGCAACTG
atttatgaatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaccaaacacgctccatctctttctagaatgttaccattaccatatttctttctgcaattagatggagattacagacttctaaggatttggtaccatttatgaatatattcggttgcagTTTACCATCCCAGGCAGCAGGCATGCAGTGCACCATGCAAGCCTCTTGCAAAAGGCAGTAGCATTGCGGACCCTGCGTGCTGCAGCTGCAGCCGCAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
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