Sequence
atgc intronic sequence ATGC exonic sequence...tagaattaaattggatggagtactagttagtagttatcttgatatgcttctttcatcgctgtattcctagatgcttaattaacttgacattgacatttagTTGGATCCTGAGCTGGAATTTGACCGTGAGATATACCCTCTTGGGCTTCTTCCAAATGCTGGGGTGGTTGTGGGTGTTTCCCAGAGAATGTCATTTACAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os02g54500.1 (Oryza sativa), 3'ss of exon 10
--------------------------------------------------------------------------------tagaattaaattggat-ggagtactagttagtagttatcttgatatgcttctttcatcgctgtattcctagatgc-----------ttaatt---aacttgacattgacattt--agTTGGATCCTGAGCTGGAATTTGACCGTGAGATATACCCTCTTGGGCTTCTTCCAAATGCTGGGGTGGTTGTGGGTGTTTCCCAGAGAATGTCATTTACAT
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gtacagattttgtatcttgtgatagtattgacatctcttttgagttttgcgatccactctgtgaatttatcaattttttttggggaaaaacttgatcaaaatcataatagtttcatatgttgttttctttcttgcattgaactcttattggtggtagtattcaaagttaatggagaacatgctatttgtttctgcagCTGGATCCGGAGCTTGAATTTGACCGTGAGGTGTATCCGCTTGGTCTTCTTCCAAATGTTGGTGTAGTTGTTGGTATTTCTCAGAGAATGTCCTTCTCGA
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G475867_T01 (Zea mays), 3'ss of exon 10
-------------------------------------------------------tagaattaaattggatggagtactagttagtagttatcttgatatgcttctttcat-cgctgtattccta--gatgctta-attaa---cttgacat-tgacatt-tagTTGGATCCTGAGCTGGAATTTGACCGTGAGATATACCCTCTTGGGCTTCTTCCAAATGCTGGGGTGGTTGTGGGTGTTTCCCAGAGAATGTCATTTACAT
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gtataagtctctgccatgagataattatgaatatccattataagttttgttacctttatgagaaacttgctgtagtcataatactttcatattctattcctcttctttaattcgttgaagacctcatgatgatgatattaacagcttgtcatgttatactgtagTTGGACCCGGAGCTTGAGTTTGATCGTGAGGTGTATCCTCTTGGTCTTCTTCCAAATGTTGGTGTGGTTGTTGGTGTTTCTCAGAGAATGTCCTTCTCAA
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G052750_T02 (Zea mays), 3'ss of exon 10
tagaattaaattggatggagtactagttagtagttatcttgatatgcttctttcatcgctgtattcctagatgct--taattaa--cttgacat-tgacatt-tagTTGGATCCTGAGCTGGAATTTGACCGTGAGATATACCCTCTTGGGCTTCTTCCAAATGCTGGGGTGGTTGTGGGTGTTTCCCAGAGAATGTCATTTACAT
|||| | | ||| | | | | ||| || | | |||| | | || || | || || | || ||| ||| | | ||| ||||||| ||||| || ||||| || ||| | || |||||||| ||||||||||| | ||| |||||||| |||||||||||||| ||||| || ||
-----ctaaactttagtgaggggaaccaaacacct-ccttaattcgttgaagacatcatgatgatattaacagccagttataaatgcatgtcatgtgatactgtagCTGGATCCGGAGCTTGAGTTTGATCGCGAGGTGTATCCTCTTGGTCTTCTTCCAAACGTTGGTGTGGTTGTTGGTGTTTCCCAGAGGATGTCCTTCTCAA
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA09G39270.2 (Glycine max), 3'ss of exon 11
-tagaattaaattggatggagtactagtt--agtagttatcttgatatgcttctttcatcgctgtattcctagatgcttaattaacttgacattgacatttagTTGGATCCTGAGCTGGAATTTGACCGTGAGATATACCCTCTTGGGCTTCTTCCAAATGCTGGGGTGGTTGTGGGTGTTTCCCAGAGAATGTCATTTACAT
|| |||| | ||| | ||| || | | || || | | ||| ||||| | || | || ||| | || ||| | | ||||||||||||| |||||||| ||||| ||||| |||||||| | || ||||||||||||||||| |||||||| |||||||||||||||||||||||| ||
ttacaattcatctggtggataggctatttgaggcaaataagttca-gtcattccttcattctggaatcagttaat--ttactgaaattggcctcattttttagTTGGATCCGGAGCTGGAGTTTGATCGTGAAGTATACCCTTTGGGACTTCTTCCAAATGCTGGTGTGGTTGTTGGTGTTTCCCAGAGAATGTCATTTCCAG
upper sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA18G47050.1 (Glycine max), 3'ss of exon 11
-tagaattaaattggatggagtactagtt--agtagttatcttgatatgcttctttcatcgctgtattcctagatgcttaattaacttgacattgacatttagTTGGATCCTGAGCTGGAATTTGACCGTGAGATATACCCTCTTGGGCTTCTTCCAAATGCTGGGGTGGTTGTGGGTGTTTCCCAGAGAATGTCATTTACAT
|| |||| | ||| | ||| || || | || || | | ||| ||||| | || | || ||| | || ||| | | ||||||||||||| |||||||| ||||| ||||| |||||||| | || ||||||||||||||||| || ||||| |||||||||||||||||||||||| ||
ttacaattcatctggtggataggctatttgaagcaaataaattca-gtctttccttcattctggaatcgattaat--ttattgaaattggcctcattttttagTTGGATCCGGAGCTGGAGTTTGATCGTGAAGTATACCCTTTGGGACTTCTTCCAAATGCTGGTGTAGTTGTTGGTGTTTCCCAGAGAATGTCATTTCCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcttctttcatcgctgtattcctagatgcttaattaacttgacattgacatttagTTGGATCCTGAGCTGGAATTTGACCGTGAGATATACCCTCTTGGGCTTCTTCCAAATGCTGGGGTGGTTGTGGGTGTTTCCCAGAGAATGTCATTTACAT
ttaattaactt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagaattaaattggatggagtactagttagtagttatcttgatatgcttctttcatcgctgtattcctagatgcttaattaacttgacattgacatttagTTGGATCCTGAGCTGGAATTTGACCGTGAGATATACCCTCTTGGGCTTCTTCCAAATGCTGGGGTGGTTGTGGGTGTTTCCCAGAGAATGTCATTTACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- -aattaaa
- - - - - -tggatgg