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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataactgactattggtttataattctatctttgcatcttataatcgtagtttgatgatgattaattactctcgccccctcttatcttctctagatttatctctggcaattctttttgtcacagGTTTTTAATAACAGCCCTGATGAGACTGCATACTTTAGAATGATCCTGAACCGGGAAAATGTGGCCAATTCAGTTGTGATGATTCAGCCTTCATTGATTT

Basic information

species Vitis vinifera
transcript Vv15s0045g00540.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os09g28610.1 (Oryza sativa), 3'ss of exon 11
gtataactgactattggtttataattctatctttgcatcttataatcgtagtttgatgatgattaattactctcgccccctcttatcttctctagatttatctctggcaattctttttgtcacagGTTTTTAATAACAGCCCTGATGAGACTGCATACTTTAGAATGATCCTGAACCGGGAAAATGTGGCCAATTCAGTTGTGATGATTCAGCCTTCATTGATTT
                ||    |  ||   |||||    |||  |    | | |||     ||     | ||   ||    ||||      ||| || |           || ||||     ||||||||||| || || |||||||| |||||||| ||||| ||| |  || || ||||| ||||  ||||| |||| |||||||||||||||||| | || |
----------------gtagggagctc-gcctttgttcattaagaaaagaatgtgacatgtatgggagattcatacctttgctta------ctaaatat-----------ttgttttctatgcagGTTTTTAACAATAGTCCTGATGAAACTGCATATTTTAGGATGGTATTGGACAGGGAAGATGTAACCAATGCAGTCGTGATGATTCAGCCTTCACTTATAT

upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os08g36994.1 (Oryza sativa), 3'ss of exon 11
gtataactgactattggtttataattctatctttgcatc--ttataatcgtagtttgatgatgattaattactctcgccccctcttatcttctctagatttatctctggcaattctttttgtcacagGTTTTTAATAACAGCCCTGATGAGACTGCATACTTTAGAATGATCCTGAACCGGGAAAATGTGGCCAATTCAGTTGTGATGATTCAGCCTTCATTGATTT
                 | | || ||| | || || | |  |        || | |||  |  | |  |   | |    | || || |||  |||  | | ||         ||  ||      ||||| |||||||| || || ||||| |||||||| ||||| |||||  | ||| | || ||||| || ||| ||||||||||||| ||||||||| | || |
-----------------tgtgtatttcgaactgtggagcgatccggtgaataatctgaaaagaactggtggttatatttctctgtt-tctattctcaaataat---------ttgcttcccatgcagGTGTTTAATAATAGTCCAGATGAAACTGCATATTTTAGGATGATGTTAAACAGAGAGAATGTAGCGAATGCAGTTGTGATGATCCAGCCTTCACTTATAT

upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G063775_T02 (Zea mays), 3'ss of exon 1
gtataactgactattggtttataattctatctttgcatcttataatcgtagtttgatgatgattaattactctcgccccctcttatcttctctagatttatctctggcaattctttttgtcacagGTTTTTAATAACAGCCCTGATGAGACTGCATACTTTAGAATGATCCTGAACCGGGAAAATGTGGCCAATTCAGTTGTGATGATTCAGCCTTCATTGATTT
                     ||      |||||     | || |  ||  ||||| |||||| | |                || | ||||| |||     |     | || ||| |||  ||||||||||||||||| |||||||| ||||| || ||||| |||||  || || | || |||||  ||||| |||||||||||||||| |||||| | || |
--------------------gtagactgttctttttcattaatcaatgt--tttgaagatgataagta---------------ta-catctctggatactaatt----atttatttctgttgcagGTTTTTAATAACAGTCCTGATGAAACTGCGTATTTTAGGATGATGTTGGACAGAGAGAATGTAACCAATACAGTTGTGATGATTCAACCTTCACTTATAT

upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA16G09260.1 (Glycine max), 3'ss of exon 3
gtataactgactattggtttataat-tctatctttgcatct-tataatcgtagtttgatgatgattaattactctcgccccctcttatcttctctagatttatctctggcaattctttttgtcacagGTTTTTAATAACAGCCCTGATGAGACTGCATACTTTAGAATGATCCTGAACCGGGAAAATGTGGCCAATTCAGTTGTGATGATTCAGCCTTCATTGATTT
                || | |  | | |||  | | | || |||||   |    ||||  |    | | |   | |   | ||  || ||      | |||| |     |||| | ||| |||||||| ||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||||||||  | ||||| ||||| ||| |||||||||| |||||||
----------------gtatgtgttgtgtattgtcggagctatataagtttg---tgatatttgccagtgatatttggtacttca-atgttt-----acttattttccttaattatatttatcacagGTCTTTAACAACAGCCCAGATGAGACTGCTTACTTTAGAATGATACTGAACCGTGAAAATGTTACAAATTCTGTTGTCATGGTTCAGCCTTCGTTGATTT

upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA03G22740.1 (Glycine max), 3'ss of exon 9
gtataactgactattggtttataattctatctttgcatcttataatcgtagtttgatgatgattaattactctcgccccctcttatcttctctagatttatctctggcaattctttttgtcacagGTTTTTAATAACAGCCCTGATGAGACTGCATACTTTAGAATGATCCTGAACCGGGAAAATGTGGCCAATTCAGTTGTGATGATTCAGCCTTCATTGATTT
                         | | | ||    | ||  | |  ||  ||  |||| |||  | ||  |       | |  | |  | |  | |||| |     |||| | ||| |||||||| ||||| |||||||| ||||||||||| |||||||||||||| || ||||| |||||||| || ||||| ||||| ||| |||||||||| |||||||
----------------------gtatgtgttttatattgttggatttataagtttgtgat-atttgtcacagtaatattttgtactttaatgtttacttattttccttaattatatttatcacagGTCTTTAACAACAGCCCAGATGAGACTGCTTACTTTAGAATGATACTAAACCGTGAAAATGTTGCGAATTCTGTTGTCATGGTTCAGCCTTCGTTGATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcgccccctcttatcttctctagatttatctctggcaattctttttgtcacagGTTTTTAATAACAGCCCTGATGAGACTGCATACTTTAGAATGATCCTGAACCGGGAAAATGTGGCCAATTCAGTTGTGATGATTCAGCCTTCATTGATTT
                                        ttctttttgtc  CT-rich tract
                                      aattcttttt  TA-rich tract