1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gagactctagttcttggccaatgagaagtccaaggagacattgtgctgaatttctgtgtgttgaattcttaaggtgttttctaattttgtgctttatcagGTTGATTCATCCAAGGAAGCCTCTCCTGATATAAAAGCATCCAGTTCGGGGGCACCTTCTCGTTTTGGCCGTTTTGGCTCACAAATATTCCAAAAGACTG
species | Vitis vinifera |
transcript | Vv15s0021g02730.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGCCTAATAGAAGCATTTCGGAGCCAGACTTTGGAAGAACTCCAAGAAAG GTTGATTCATCCAAGGAAGCCTCTCCTGATATAAAAGCATCCAGTTCGGGGEST: gi|351019051|gb|FQ426550.1|FQ426550
genomic: AGCCTAATAGAAGCATTTCGGAGCCAGACTTTGGAAGAACTCCAAGAAAGgtagatgttg ... gctttatcagGTTGATTCATCCAAGGAAGCCTCTCCTGATATAAAAGCATCCAGTTCGGGG
EST: AGCCTAATAGAAGCATTTCGGAGCCAGACTTTGGAAGAACTCCAAGAAAG GTTGATTCATCCAAGGAAGCCTCTCCTGATATAAAAGCATCCAGTTCGGGGEST: gi|349827257|gb|FQ421530.1|FQ421530
genomic: AGCCTAATAGAAGCATTTCGGAGCCAGACTTTGGAAGAACTCCAAGAAAGgtagatgttg ... gctttatcagGTTGATTCATCCAAGGAAGCCTCTCCTGATATAAAAGCATCCAGTTCGGGG
EST: AGCCTAATAGAAGCATTTCGGAGCCAGACTTTGGAAGAACTCCAAGAAAG GTTGATTCATCCAAGGAAGCCTCTCCTGATATAAAAGCATCCAGTTCGGGGEST: gi|351049265|gb|FQ429008.1|FQ429008
genomic: AGCCTAATAGAAGCATTTCGGAGCCAGACTTTGGAAGAACTCCAAGAAAGgtagatgttg ... gctttatcagGTTGATTCATCCAAGGAAGCCTCTCCTGATATAAAAGCATCCAGTTCGGGG
EST: AGCCTAATAGAAGCATTTCGGAGCCAGACTTTGGAAGAACTCCAAGAAAG GTTGATTCATCCAAGGAAGCCTCTCCTGATATAAAAGCATCCAGTTCGGGG
genomic: AGCCTAATAGAAGCATTTCGGAGCCAGACTTTGGAAGAACTCCAAGAAAGgtagatgttg ... gctttatcagGTTGATTCATCCAAGGAAGCCTCTCCTGATATAAAAGCATCCAGTTCGGGG
ctgaatttctgtgtgttgaattcttaaggtgttttctaattttgtgctttatcagGTTGATTCATCCAAGGAAGCCTCTCCTGATATAAAAGCATCCAGTTCGGGGGCACCTTCTCGTTTTGGCCGTTTTGGCTCACAAATATTCCAAAAGACTG
ttctaat putative branch site (score: 2)
ctttatc putative PPT
tgttttctaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagactctagttcttggccaatgagaagtccaaggagacattgtgctgaatttctgtgtgttgaattcttaaggtgttttctaattttgtgctttatcagGTTGATTCATCCAAGGAAGCCTCTCCTGATATAAAAGCATCCAGTTCGGGGGCACCTTCTCGTTTTGGCCGTTTTGGCTCACAAATATTCCAAAAGACTG
- - - - - ttcttgg
- - - - - - - - -ccaatga
- - - - - - - - - - - - - - -ccaagga
- - - - - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt