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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtcattctttgcatttactctttcattgctctctctccctctctctgccctcgttctcattttaaattgatgatgtcacagGTTTTGATAACCTTCGCTAATGCATTTCATGCTTTGCAACCCCTCAAAATTCCTGCATTCAG

Basic information

species Vitis vinifera
transcript Vv15s0021g02610.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g02610.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA07G14770.1 (Glycine max), 3'ss of exon 44
--------gtagtcattctttgcatttactct---ttcattgctctct---ctccctctctctgccctcgttctcattttaaattgatg-atgtc-acagGTTTTGATAACCTTCGCTAATGCATTTCATGCTTTGCAACCCCTCAAAATTCCTGCATTCAG
         | ||  || || ||| |   | |   | || | | |       |     |    ||   |||  |    | | |    |  || |   ||| |||| |   | || || |||||||||||||||||||| ||||||||| |||||||||||||
tgattaggctggttttttttggcaatgcatttcagtccagtacccaacaagttaatattacaggcatgcgtgtttgactaataccacttcatatttgcagATTTTAACTGCTTTTGCCAATGCATTTCATGCTTTGCAGCCCCTCAAAGTTCCTGCATTCAG

upper sequence: Vv15s0021g02610.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA03G27270.1 (Glycine max), 3'ss of exon 44
-----------gtagtcattctttgcatttactctttcattgctc--tctctccctctctctgccct-cgttctcattttaaattgatg-atgtc-acagGTTTTGATAACCTTCGCTAATGCATTTCATGCTTTGCAACCCCTCAAAATTCCTGCATTCAG
              | || |        ||| | | |   ||||   |   |   | |  | | | |  ||  |    | | |    |  ||||   ||| |||| |     || || |||||||||||||||||||| ||||||||| |||||||||||||
acccataatcacctggcaattaagatggttattttatttgtgctgaattagttaatattacagacatgtgtgtttgactaataccacttcatgtttgcagATTTTAACTGGTTTTGCCAATGCATTTCATGCTTTGCAGCCCCTCAAAGTTCCTGCATTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30302483|gb|CB979277.1|CB979277
EST:     TATCAGAACTTGGTTCCCCTGATCCCGTCTTCGATGGTGCAAACTTTCAG                         GTTTTGATAACCTTTGCTAATGCATTTCATGCTTTGCAACCCCTCAAAATT
genomic: TATCAGAACTTGGTTCCCCTGATCCTGTCTTTGATGGTGCAAACTTTCAGgtagtcattc ... gatgtcacagGTTTTGATAACCTTCGCTAATGCATTTCATGCTTTGCAACCCCTCAAAATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctctctctccctctctctgccctcgttctcattttaaattgatgatgtcacagGTTTTGATAACCTTCGCTAATGCATTTCATGCTTTGCAACCCCTCAAAATTCCTGCATTCAG
                                      aattgat  putative branch site (score: 4)
                                attttaaattgatgat  TA-rich tract