Sequence
atgc intronic sequence ATGC exonic sequencegtgagtacggccaattgagatatcaatttactttgtaactgatggtaccaaatgatggtaattttttatccttgtacagTTTTCAAAGGCTTTGAATCGCTTTCAGAGAGAGGATCCTACTTTCCGTGTTGGGTTGGACGCTGAGAGTGGGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os03g36780.1 (Oryza sativa), 3'ss of exon 11
--------gtgagtacggccaattgagatatcaatttactttgtaactgatggtaccaaatgatggtaattttttatccttgtacagTTTTCAAAGGCTTTGAATCGCTTTCAGAGAGAGGATCCTACTTTCCGTGTTGGGTTGGACGCTGAGAGTGGGCAG
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gtatctacttttctattttcaagaatgctat--attaactttaataccatacatgtgaca-aataattaattaaaataacatttcagTTTTCAAAGGCTCTGAATCGTTTCCAGAAAGAGGATCCTACTTTCCGTGTAGGTCTGGATCCAGAAAGTGGAGAG
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G056393_T02 (Zea mays), 3'ss of exon 11
----------------gtgagtacggc-caattgagatatcaatttactttgtaactgatggtaccaaatgatggtaattttttatccttgtacagTTTTCAAAGGCTTTGAATCGCTTTCAGAGAGAGGATCCTACTTTCCGTGTTGGGTTGGACGCTGAGAGTGGGCAG
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gtatatcatatttttcatcaaaagggtacgactgctatacatagtttgttacc--ctagatgtcctaagtgaaaata--cacctatcccttt-cagTTTTCAAAAGCTCTGAATCGCTTCCAAAAGGAGGATCCTACTTTCCGTGTGGGTTTGGATGCTGAGAGTGGCCAG
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA11G16460.1 (Glycine max), 3'ss of exon 11
----gtgagtacggccaattgagatatcaatttact--------ttgtaactgatggtaccaaatgatggtaattttttatccttg--tacagTTTTCAAAGGCTTTGAATCGCTTTCAGAGAGAGGATCCTACTTTCCGTGTTGGGTTGGACGCTGAGAGTGGGCAG
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gtgagtaatttattttatgtaacacgtcaaccccctgcctagatttgaaaaaagttgtatcacctaattggatttctcctgaattgcttacagTTTTCAAAAGCTTTGAATCGCTTCCAAAAAGAAGATCCTACTTTTCGTGTTGGCTTGGACCCGGAGAGTGGGCAG
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA01G14800.1 (Glycine max), 3'ss of exon 6
----gtgagtacggccaattgagatatcaat--ttactttgtaactga------tggtaccaaatgatggtaattttttat---ccttgtacagTTTTCAAAGGCTTTGAATCGCTTTCAGAGAGAGGATCCTACTTTCCGTGTTGGGTTGGACGCTGAGAGTGGGCAG
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gtgagtaatttattttatgtaacatgtcaacccctgccctagatttgaaaaacgttgtatcacctaattggatttctctgtgaattgcttacagTTTTCAAAAGCTTTGAATCGCTTCCAAAAAGAAGATCCTACATTTCGTGTTGGCTTGGACCCGGAGAGTGGGCAG
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT2G45030.1 (Arabidopsis thaliana), 3'ss of exon 11
---------gtgagtacggccaattgagatatcaatttactttg---taactgatggtaccaaatgatggtaattt---tttatcctt--gtac-agTTTTCAAAGGCTTTGAATCGCTTTCAGAGAGAGGATCCTACTTTCCGTGTTGGGTTGGACGCTGAGAGTGGGCAG
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gtaacttctgtgaactttga-agctaaaacagcaacatatttttccttcaattctggttttaaacatttgcaactgaaatctattttttggtgttagTTCTCGAAAGCATTGAATCGATTCCAGAAAGAGGATCCTACTTTCCGTGTGGGTTTGGATCCCGAGAGTGGCCAG
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT1G45332.1 (Arabidopsis thaliana), 3'ss of exon 11
-------gtgagtacggccaa-ttgagatatcaa-----tttactttgtaactgatggtaccaaat----gatggtaattttttatccttgtacagTTTTCAAAGGCTTTGAATCGCTTTCAGAGAGAGGATCCTACTTTCCGTGTTGGGTTGGACGCTGAGAGTGGGCAG
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gtaacttatgtgaactttgaagctgaaacaacaacatatttttcctttaatctggttttacgaaatttgcaactgaaatctattttccggtgttagTTCTCGAAAGCACTGAATCGATTCCAGAAAGAGGATCCTACTTTCCGTGTGGGTTTGGATCCCGAGAGTGGCCAG
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: PP1S20_94V6.1 (Physcomitrella patens), 3'ss of exon 9
------------------------gtgagtacggccaattgagatatcaatttactttgtaactgatggtaccaaatgatggtaattttttatccttgtacagTTTTCAAAGGCTTTGAATCGCTTTCAGAGAGAGGATCCTACTTTCCGTGTTGGGTTGGACGCTGAGAGTGGGCAG
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gtgattgtgccctctgcatttaatgtttacgcaatgagttaatttatcgatttcaatcgtattttctaattt---atgtcggaatttgattgtggggggatagTTTTCAAAGGCCTTGAATCGGTTTCAAAAAGAGGATCCAACATTCCGGGTCAGTTTGGATCCAGATAGTGGCCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatttactttgtaactgatggtaccaaatgatggtaattttttatccttgtacagTTTTCAAAGGCTTTGAATCGCTTTCAGAGAGAGGATCCTACTTTCCGTGTTGGGTTGGACGCTGAGAGTGGGCAG
ttttttatccttgt CT-rich tract
atggtaattttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtacggccaattgagatatcaatttactttgtaactgatggtaccaaatgatggtaattttttatccttgtacagTTTTCAAAGGCTTTGAATCGCTTTCAGAGAGAGGATCCTACTTTCCGTGTTGGGTTGGACGCTGAGAGTGGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT