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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatttatgatctagatttaatgtcataggttgtgcctttctttgggcaacatttgatatctattggcattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG

Basic information

species Vitis vinifera
transcript Vv15s0021g01230.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351035456|gb|FQ463301.1|FQ463301
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCGCCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351016500|gb|FQ423927.1|FQ423927
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351016499|gb|FQ423926.1|FQ423926
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351025032|gb|FQ433449.1|FQ433449
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351034412|gb|FQ463225.1|FQ463225
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351033348|gb|FQ446580.1|FQ446580
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351027650|gb|FQ446817.1|FQ446817
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351024489|gb|FQ426298.1|FQ426298
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|352790073|gb|FQ479683.1|FQ479683
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351046338|gb|FQ448643.1|FQ448643
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351054204|gb|FQ450286.1|FQ450286
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351019825|gb|FQ439642.1|FQ439642
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351039502|gb|FQ461369.1|FQ461369
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351026622|gb|FQ436275.1|FQ436275
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|349833020|gb|FQ416398.1|FQ416398
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|352789985|gb|FQ479595.1|FQ479595
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTACACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351033263|gb|FQ462035.1|FQ462035
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351040162|gb|FQ425248.1|FQ425248
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351054398|gb|FQ450481.1|FQ450481
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351037106|gb|FQ456939.1|FQ456939
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGCG-
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTG-GA
EST: gi|349832664|gb|FQ422022.1|FQ422022
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351056659|gb|FQ443286.1|FQ443286
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351028040|gb|FQ425941.1|FQ425941
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351043435|gb|FQ451487.1|FQ451487
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351042076|gb|FQ456286.1|FQ456286
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351034920|gb|FQ458277.1|FQ458277
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351046877|gb|FQ454487.1|FQ454487
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351035498|gb|FQ463343.1|FQ463343
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351031204|gb|FQ445031.1|FQ445031
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351022167|gb|FQ438752.1|FQ438752
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351051825|gb|FQ455239.1|FQ455239
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAAGCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|349815577|gb|FQ400733.1|FQ400733
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351036533|gb|FQ457246.1|FQ457246
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351052468|gb|FQ452501.1|FQ452501
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|349827622|gb|FQ422490.1|FQ422490
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351024264|gb|FQ423687.1|FQ423687
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351025469|gb|FQ435161.1|FQ435161
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351025913|gb|FQ427925.1|FQ427925
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351044016|gb|FQ431447.1|FQ431447
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|349828962|gb|FQ419295.1|FQ419295
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|352798342|gb|FQ480367.1|FQ480367
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351016726|gb|FQ424153.1|FQ424153
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351026266|gb|FQ428278.1|FQ428278
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351014382|gb|FQ437384.1|FQ437384
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|349823406|gb|FQ423217.1|FQ423217
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351025836|gb|FQ427848.1|FQ427848
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|349830206|gb|FQ420466.1|FQ420466
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351039874|gb|FQ464912.1|FQ464912
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|349819006|gb|FQ411701.1|FQ411701
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|161715288|gb|FC064876.1|FC064876
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351036393|gb|FQ458768.1|FQ458768
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351042077|gb|FQ456287.1|FQ456287
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG
EST: gi|351037820|gb|FQ464261.1|FQ464261
EST:     TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAG                         ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGGG
genomic: TTGATCATATTGAAGAAATCGTCCAATGGATGGGTTGGGAACCTTTCAAGgtataattta ... cattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcataggttgtgcctttctttgggcaacatttgatatctattggcattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG
                             atttgat  putative branch site (score: 5)
                             atttgatatctatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
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gtataatttatgatctagatttaatgtcataggttgtgcctttctttgggcaacatttgatatctattggcattttgcagATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT