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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgagcatgcgcatatatatatatatatatatatataacactagaagtatagcttccccctgccccacctgcagatcttattcgaagtttttctaacattatgcagATGGAAAAGACTGTTGAAATTAATGAGAACTCCCGGTTTCTTGAAGACTTGGAACTGCTTAGGGCTGCCCCCGCTGAGCATTTACCAAGTTCTGTAGATG

Basic information

species Vitis vinifera
transcript Vv14s0171g00380.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254917664|gb|GR903316.1|GR903316
EST:     AGAAGAAGAGGGAGCTTGAGAGGGCAGCAGCACGACAAGCATTACAGAAG                         ATGGAAAAGACTGTTGAAATTAATGAGAACTCCCGGTTTCTTGAAGACTTG
genomic: AGAAGAAGAGGGAGCTTGAGAGGGCAGCAGCACGACAAGCATTACAGAAGgtaaatgagc ... cattatgcagATGGAAAAGACTGTTGAAATTAATGAGAACTCCCGGTTTCTTGAAGACTTG
EST: gi|110728152|gb|EE103469.1|EE103469
EST:     AGAAGAAGAGGGAGCTTGAGAGGGCAGCAGCACGACAAGCATTACAGAAG                         ATGGAAAAGACTGTTGAAATTAATGAGAACTCCCGGTTTCTTGAAGACTTG
genomic: AGAAGAAGAGGGAGCTTGAGAGGGCAGCAGCACGACAAGCATTACAGAAGgtaaatgagc ... cattatgcagATGGAAAAGACTGTTGAAATTAATGAGAACTCCCGGTTTCTTGAAGACTTG
EST: gi|87585678|gb|DY474299.1|DY474299
EST:     AGAAGAAGAGGGAGCTTGAGAGGGCAGCAGCACGACAAGCATTACAGAAG                         ATGGAAAAGACTGTTGAAATTAATGAGAACTCCCGGTTTCTTGAAGACTTG
genomic: AGAAGAAGAGGGAGCTTGAGAGGGCAGCAGCACGACAAGCATTACAGAAGgtaaatgagc ... cattatgcagATGGAAAAGACTGTTGAAATTAATGAGAACTCCCGGTTTCTTGAAGACTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttccccctgccccacctgcagatcttattcgaagtttttctaacattatgcagATGGAAAAGACTGTTGAAATTAATGAGAACTCCCGGTTTCTTGAAGACTTGGAACTGCTTAGGGCTGCCCCCGCTGAGCATTTACCAAGTTCTGTAGATG
                                       ttctaac  putative branch site (score: 1)
                                    tttttctaacattat  TA-rich tract