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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttgtacagttttgtgtcaagaaaattttctgctggattccagtgttttgctttctcttcttcttgtaagatttgtgtataagtaatttttattatctaatttgctgactctaagcagCTCATATATGAGAAACTTCCCAAGGACATTTCAGAACGGCATGTCCTGCTTCTGGACCCAGTTCTTGCTACAG

Basic information

species Vitis vinifera
transcript Vv14s0171g00090.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718948|gb|FC068634.1|FC068634
EST:     TAAAAATTGGAAAAATTCTGATTCACCGTGATGGAGATAATGGGAAACAG                         CTCATATATGAGAAACTTCCTAAGGACATTTCAGAACGGCATGTCCTGCTT
genomic: TAAAAATTGGAAAAATTCTGATTCACCGTGATGGAGATAATGGGAAACAGgtatggttgt ... ctctaagcagCTCATATATGAGAAACTTCCCAAGGACATTTCAGAACGGCATGTCCTGCTT
EST: gi|22009982|gb|BQ795016.1|BQ795016
EST:     TAAAAATTGGAAAAATTCTGATTCACCGTGATGGAGATAATGGGAAACAG                         CTCATATATGAGAAACTTCCTAAGGACATTTCAGAACGGCATGTCCTGCTT
genomic: TAAAAATTGGAAAAATTCTGATTCACCGTGATGGAGATAATGGGAAACAGgtatggttgt ... ctctaagcagCTCATATATGAGAAACTTCCCAAGGACATTTCAGAACGGCATGTCCTGCTT
EST: gi|110701989|gb|EE080193.1|EE080193
EST:     TAAAAATTGGAAAAATTCTGATTCACCGTGATGGAGATAATGGGAAACAG                         CTCATATATGAGAAACTTCCTAAAGACATTTCAGAACGGCATGTCCTGCTT
genomic: TAAAAATTGGAAAAATTCTGATTCACCGTGATGGAGATAATGGGAAACAGgtatggttgt ... ctctaagcagCTCATATATGAGAAACTTCCCAAGGACATTTCAGAACGGCATGTCCTGCTT
EST: gi|37190189|gb|CF609538.1|CF609538
EST:     TAAAAATTGGAAAAATTCTGATTCACCGTGATGGAGATAATGGGAAACAG                         CTCATATATGAGAAACTTC
genomic: TAAAAATTGGAAAAATTCTGATTCACCGTGATGGAGATAATGGGAAACAGgtatggttgt ... ctctaagcagCTCATATATGAGAAACTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtaagatttgtgtataagtaatttttattatctaatttgctgactctaagcagCTCATATATGAGAAACTTCCCAAGGACATTTCAGAACGGCATGTCCTGCTTCTGGACCCAGTTCTTGCTACAG
                                       tgctgac  putative branch site (score: 2)
     agatttgtgtataagt  TA-rich tract