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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttaacaaagactttcaatttatagagaggataaagatggaaactaactgcaaaatttttcagGTGGTGAAACCAAAGATAATTCAACTTTAGCATCCATCACATCTTCAAGCACTCCCACTGATACGGACAG

Basic information

species Vitis vinifera
transcript Vv14s0068g00780.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351040762|gb|FQ438306.1|FQ438306
EST:     GATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAG                         GTGGTGAAACCAAAGAAAATTC
genomic: GATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAGgtattttaac ... aatttttcagGTGGTGAAACCAAAGATAATTC
EST: gi|351046211|gb|FQ442589.1|FQ442589
EST:     GATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAG                         GTGGTGAAACCAAAGATAATTCAACTTTAGCATCCATCACATCTTCAAGCG
genomic: GATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAGgtattttaac ... aatttttcagGTGGTGAAACCAAAGATAATTCAACTTTAGCATCCATCACATCTTCAAGCA
EST: gi|351030030|gb|FQ430772.1|FQ430772
EST:     GATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAG                         GTGGTGAAACAAAAGATAATTCAACTTTAGCATCCATCACAATCT-CAAGC
genomic: GATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAGgtattttaac ... aatttttcagGTGGTGAAACCAAAGATAATTCAACTTTAGCATCCATCACA-TCTTCAAGC
EST: gi|351013510|gb|FQ425541.1|FQ425541
EST:     ATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCCAAAAG                         -TGGTGAAACCAAAGATAATTCACCTTTAGCAT
genomic: ATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCC-AAAAGgtattttaac ... aatttttcagGTGGTGAAACCAAAGATAATTCAACTTTAGCAT
EST: gi|22008856|gb|BQ793890.1|BQ793890
EST:     GATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAG                         GTGGTGAAACCAAAGATAATTCAACTTTAGCATCCATCACATCTACAAGCA
genomic: GATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAGgtattttaac ... aatttttcagGTGGTGAAACCAAAGATAATTCAACTTTAGCATCCATCACATCTTCAAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agactttcaatttatagagaggataaagatggaaactaactgcaaaatttttcagGTGGTGAAACCAAAGATAATTCAACTTTAGCATCCATCACATCTTCAAGCACTCCCACTGATACGGACAG
                                 aactaac  putative branch site (score: 1)
                                               tttttc  putative PPT
     ttcaatttata  TA-rich tract