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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcggattctggtgcctttccagaaaggccaaacctaatagctatttgacttgcttgctttgctcttgcagATTGATGCTCATGTTGGTTGTGTTAATGACATAGCTTTTGCTCATCCAAACAAACAACTTTGTGTAGTAACCTGTGGTGATGATAAACTGATAAAG

Basic information

species Vitis vinifera
transcript Vv14s0060g01680.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G416836_T01 (Zea mays), 3'ss of exon 10
---------gtgagttcggattctggtgcctttccagaaaggcca-aaccta-atagct--atttgacttgcttgctttgctcttg----cagATTGATGCTCATGTTGGTTGTGTTAATGACATAGCTTTTGCTCATCCAAACAAACAACTTTGTGTAGTAACCTGTGGTGATGATAAACTGATAAAG----
            |   |  | |||  |   |    | ||| | || |||| | ||| ||  |  ||  ||  |  | ||  ||||     ||||||| |||||||  |||  |||| ||||| ||||| ||  | |  |||||||| ||||||||||| || |||||||| ||||||||||||||||||    
gtaccacaatccacaacaaactcttatagataattaaaaatgacataacccatataacttaaactgtgttattaccatttttcttcatgtcagATTGTTGCTCATTCTGGAGGTGTAAATGATATAGCATTCTCACGACCAAACAAGCAACTTTGTGTGGTCACCTGTGGAGATGATAAACTGATAAAGGTAG

upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA10G29090.1 (Glycine max), 3'ss of exon 12
gtgagttcggattctggtgcctttccagaaaggccaaacct-aatagctatttgacttgc-ttgctttgctcttgcagATTGATGCTCATGTTGGTTGTGTTAATGACATAGCTTTTGCTCATCCAAACAAACAACTTTGTGTAGTAACCTGTGGTGATGATAAACTGATAAAG
      |   |||||  |  | |   | | ||   ||   |  || ||  ||||  || | |  | ||| |   |||| ||||||||||||||||  |||| |||||| | || |||||||||||||| ||||| || ||| | || || ||||| ||||||||  ||||||||
-----gtgacattct--tttcataaaaaatagctgaagttttgattgcagtttggtttacatctccttgtttaagcagGTTGATGCTCATGTTGGGGGTGTGAATGACTTGGCATTTGCTCATCCAAATAAACAGCTGTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAG

upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA19G41840.2 (Glycine max), 3'ss of exon 11
gtgagttcggattctggtgcctttccagaaaggccaaacct--aatagctatttgacttgc-ttgctttgctcttgcagATTGATGCTCATGTTGGTTGTGTTAATGACATAGCTTTTGCTCATCCAAACAAACAACTTTGTGTAGTAACCTGTGGTGATGATAAACTGATAAAG
      |  ||||    | | | ||   |    |||||  |   || || |||||| || | ||   ||||   | ||| ||||||| ||| ||||| | ||||||||| | || ||||||||||| || |||||||| ||| | || || ||||| ||||||||  ||||||||
-----gtgagatt---attcttatcataagtaaccaaagttgtgattgcaatttgatttacattttcttgcggatacagGTTGATGCCCATATTGGTGGAGTTAATGACTTGGCATTTGCTCATCCGAATAAACAACTCTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccagaaaggccaaacctaatagctatttgacttgcttgctttgctcttgcagATTGATGCTCATGTTGGTTGTGTTAATGACATAGCTTTTGCTCATCCAAACAAACAACTTTGTGTAGTAACCTGTGGTGATGATAAACTGATAAAG
                                     cttgctttgctctt  CT-rich tract
                          tatttga  TA-rich tract