Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatcgatcttaggtctcatttacttgatccatcatttttctactccatgcttctctttttcgtttaggtgcatcaataatttgtttactcccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACCCGCCTGCCAAATGGCCGATTTCTTCCACCACTATTCAACTTTAAGCCTC

Basic information

species Vitis vinifera
transcript Vv14s0060g00600.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA20G22600.1 (Glycine max), 3'ss of exon 11
-----tcatcgatcttaggtctcatttacttgatccatcatttttctactccatgcttctctttttcgtttaggtgcatcaataatttgtttactcccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACCCGCCTGCCAAATGGCCGATTTCTTCCACCACTATTCAACTTTAAGCCTC
     |  || || ||| || |  |   |||  |     || | | |    ||   |||  |  |  || ||     ||   | ||||   |        ||||| | ||||||||||| ||| | |||||||| ||||| |||||  |||  || ||| |||||||||||||||| |||||||||||||| || || ||  | |
tgtgtttgtcaattttatgtttgctagtcttagtattctatatctgtttctcaactttcgataatatgtgta-----atttgtgattttgctttatgtggtgcagTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCC

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA19G41420.1 (Glycine max), 3'ss of exon 11
--------------------------------------------------------tcatcgatcttaggtctcatttacttgatccatcatttttctactccatgcttctctttttcgtttaggtgcatcaataatttgtttactcccaat-------gcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACCCGCCTGCCAAATGGCCGATTTCTTCCACCACTATTCAACTTTAAGCCTC
                                                        |     |  |   |    | |    || |   |||| |    | |   |      ||||   ||||      ||   |  ||  ||||    ||||       |||| | ||||||||||||||| | ||||| ||||| || |||||| ||| ||| ||| |||||||||| || || ||||||||| | ||||| |||||  |||
gtgagtatatttgactttttagcaggcctttctaactctaatttcaatccgcctaatttgtaaaatggagctgtactgctctgctttttcatgtaatgattgtttctcctcctttgaagttttatataatgggtttttactttatcttcaatatcttgtgcagTTAGATGCCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACTCGCTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTC

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA03G38850.2 (Glycine max), 3'ss of exon 11
----------------------------------tcatcgatcttag---gtctcatttacttgatccatcatttttctactcc-------atgcttctctttttcgtttaggtgcatca-ataatttgtttact------cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACCCGCCTGCCAAATGGCCGATTTCTTCCACCACTATTCAACTTTAAGCCTC
                                   |    || | |      || |||| |   ||  | |  |  | |||| |       ||| || | | |     || |  || | | ||||| |||||  |       |   ||||| | ||| ||||||||||| | ||||| ||||| || |||||| ||| ||| ||| |||||||||| || || ||||||||| | ||||| |||||  |||
gtgagtacatttgacttcttagcaggcctttctaactctaatttcaatccacctaatttgcaaaatggagctgtactgtactgctcatgtaatgattgtttctccgcctttgaagctttatataatgtgttttttactttatcttgtgcagTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACTCGCTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTC

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA10G28530.2 (Glycine max), 3'ss of exon 11
-------------------------------------------------------------------------------------------------tcatcgatcttaggtctcatttacttgatccatcatttttctactccatgcttctctttttcgtttaggtgcatcaataatttgtttactcccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACCCGCCTGCCAAATGGCCGATTTCTTCCACCACTATTCAACTTTAAGCCTC
                                                                                                 |   | || ||| || |   | |  | ||   ||| | ||    ||    | |||  || |   ||  ||   |    | |||   |        || || | ||||||||||| ||| | ||||| || || || |||||  |||   | ||| |||||||||||||||| |||||||||||||| || || ||  | |
gtgagtatcggacttcttatcaaacttttagtatcccaccttaggaaaaaagataataatagtgcttccttggttttgcaagtttgtgtttcagtgtttggcaattttatgtttt-ctaatctaattattcaatgtttgtgtctcaacatctgattatgtattgagtattttgtgatttttgctttgtgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30302512|gb|CB979306.1|CB979306
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|27579904|gb|CB002599.1|CB002599
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|34546629|gb|CF514861.1|CF514861
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|156737184|gb|EV241305.1|EV241305
EST:     TTTGGTTTTCA-GACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: TTTGGTTT-CAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|22008977|gb|BQ794011.1|BQ794011
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|30253239|gb|CB970790.1|CB970790
EST:     ATTCGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|352786947|gb|FQ475980.1|FQ475980
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|34546808|gb|CF515040.1|CF515040
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|110700433|gb|EE078469.1|EE078469
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|110399980|gb|EC966516.1|EC966516
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|30129168|gb|CB914507.1|CB914507
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|30131217|gb|CB916556.1|CB916556
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|349828876|gb|FQ419209.1|FQ419209
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         AATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCAC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagA-TGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCAC
EST: gi|30128398|gb|CB913737.1|CB913737
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|30134321|gb|CB919659.1|CB919659
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|87584334|gb|DY473544.1|DY473544
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|110424518|gb|EC990881.1|EC990881
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|110367470|gb|EC931404.1|EC931404
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|110416992|gb|EC983012.1|EC983012
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|110423991|gb|EC990344.1|EC990344
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|30302437|gb|CB979231.1|CB979231
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|22014270|gb|BQ799304.1|BQ799304
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|110424369|gb|EC990727.1|EC990727
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|33404206|gb|CF209833.1|CF209833
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|34543640|gb|CF511872.1|CF511872
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|110371622|gb|EC935735.1|EC935735
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|30298223|gb|CB975017.1|CB975017
EST:     GACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: GACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|32245410|gb|CD711229.1|CD711229
EST:     ATTTGGTGTCAAGACTCCTGCAGTACTCTCGTAATGTCCGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGTTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|30136122|gb|CB921460.1|CB921460
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|110408420|gb|EC974056.1|EC974056
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|352789914|gb|FQ478729.1|FQ478729
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCGCAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|30256310|gb|CB972153.1|CB972153
EST:     ATTTNGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|156737183|gb|EV241304.1|EV241304
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|32245847|gb|CD711666.1|CD711666
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|110694879|gb|EE072256.1|EE072256
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|33405797|gb|CF211424.1|CF211424
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|34543715|gb|CF511947.1|CF511947
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATTTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|110704710|gb|EE081696.1|EE081696
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|34547238|gb|CF515470.1|CF515470
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|37187368|gb|CF606721.1|CF606721
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|33404123|gb|CF209750.1|CF209750
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|110729460|gb|EE105432.1|EE105432
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAACTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|110386931|gb|EC951566.1|EC951566
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|30129063|gb|CB914402.1|CB914402
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|27582365|gb|CB005060.1|CB005060
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
EST: gi|110411115|gb|EC976817.1|EC976817
EST:     ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCT                         ATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC
genomic: ATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtacat ... cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatgcttctctttttcgtttaggtgcatcaataatttgtttactcccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACCCGCCTGCCAAATGGCCGATTTCTTCCACCACTATTCAACTTTAAGCCTC
                                       tttactccc  CT-rich tract
                           atcaataatttgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcatcgatcttaggtctcatttacttgatccatcatttttctactccatgcttctctttttcgtttaggtgcatcaataatttgtttactcccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACCCGCCTGCCAAATGGCCGATTTCTTCCACCACTATTCAACTTTAAGCCTC

- - - - - - - - -catttac
- - - - - - - - - - - - - -atccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatcaa