Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgcttccttttttccttgatgtttggagttcatcattctaacttaccaattgaattaccaaatcttatcaacatttttcattgtgtagGTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTTGCTTATAATCAG

Basic information

species Vitis vinifera
transcript Vv14s0030g00710.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G037342_T02 (Zea mays), 3'ss of exon 12
gtgggtgcttccttttttccttgatgtttggagttcatcattctaacttaccaattgaattaccaaatcttatcaacatttttcattgtgtagGTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTTGCTTATAATCAG
    ||   || ||   |     |  | |  | |||    || |    |    |   | ||   |  |    |  |   | ||  |  |  |||||||  | |||||||| ||||||||||| |||||||||||| | ||  | ||||| ||| ||
----gtaagtctttaacttagcaacatcttaacttc----ttatgttctcttgaaacagttgttatgttccttacatgatattggtcattcagGTTATTGTTTGGTGGGCGGGTCTCATGAGAGGTGCTGTGTCTATTGCGTTGGCTTACAATAAG

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA03G40290.1 (Glycine max), 3'ss of exon 11
gtgggtgcttccttttttccttgatgtttggagttcatcattctaacttaccaattgaattaccaaatcttatcaacat-ttttcattgtgtagGTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTTGCTTATAATCAG
      |  |   |   |   ||    |  |  ||  ||  ||    || |   ||| |||  ||  |  | |  |||  |||||    | ||||| ||||| |||||||||||||| ||||| |||||||| ||  |||| ||||| || ||||||
------gtatggctacatttctgtcaataagtattt-tctctcaggatttc---ttggattgtcaggttatgttgacaagttttctcactttagGTGATAATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATGGCACTTGCCTACAATCAG

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA19G42900.1 (Glycine max), 3'ss of exon 11
gtgggtgcttccttttttccttgatgtttggagttcatcattctaacttaccaattgaattaccaaatcttatcaacatttttcattgtgtagGTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTTGCTTATAATCAG
              | |  || ||| | || |  |  ||  | | |        | | |||  ||  |  | |  |||  |||     | ||||| ||||| |||||||||||||| ||||| |||||||| ||  |||| ||||| || ||||||
-------------gtatggctagatttctgcaagtattctctgtcagg-gtttttaggattgtcaggttatgttgacaaatttttcattctagGTGATAATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATGGCACTTGCCTACAATCAG

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA20G37370.1 (Glycine max), 3'ss of exon 12
------gtgggtgcttccttttttccttgatgtttggagttcatcattctaacttacca-attgaattaccaaatcttatcaacatttttcattgtgtagGTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTTGCTTATAATCAG
       |   |   | |   |    |   | |||   |||  |    |||   |||||  ||  | |   |  | |  |||   ||| ||| | | |||||||| || |||||||||||||| ||||| |||||||| ||  | || ||||| |||||||||
gtatggttaaatatctgccagtgagttccctttttcaggtttcttgcgcta--ctaccatgttttactgataggtttc-tcattgtttctcaat-tctagGTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATCGCACTTGCATATAATCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26263890|gb|CA814953.1|CA814953
EST:     CCAGCTTAGCCAAGAAGAACCCAACTGAAAAAATCACTTTCAGGCAGCAA                         GTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTT
genomic: CCAACTTAGCCAAGAAGAACCCAACTGAAAAAATCACTTTCAGGCAGCAAgtgggtgctt ... cattgtgtagGTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTT
EST: gi|33403305|gb|CF208932.1|CF208932
EST:     CCAACTTAGCCAAGAAGAACCCAACTGAAAAAATCACTTTCAGGCAGCAA                         GTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTT
genomic: CCAACTTAGCCAAGAAGAACCCAACTGAAAAAATCACTTTCAGGCAGCAAgtgggtgctt ... cattgtgtagGTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTT
EST: gi|161720457|gb|FC070569.1|FC070569
EST:     CCAACTTAGCCAAGAAGAACCCAACTGAAAAAATCACTTTCAGGCAGCAA                         GTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTT
genomic: CCAACTTAGCCAAGAAGAACCCAACTGAAAAAATCACTTTCAGGCAGCAAgtgggtgctt ... cattgtgtagGTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTT
EST: gi|161720623|gb|FC070233.1|FC070233
EST:     CCAACTTAGCCAAGAAGAACCCAACTGAAAAAATCACTTTCAGGCAGCAA                         GTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTT
genomic: CCAACTTAGCCAAGAAGAACCCAACTGAAAAAATCACTTTCAGGCAGCAAgtgggtgctt ... cattgtgtagGTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTT
EST: gi|26265801|gb|CA816864.1|CA816864
EST:     CAAGAAGAACCCAACTGAAAAAATCACTTTCAGGCAGCAA                         GTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTT
genomic: CAAGAAGAACCCAACTGAAAAAATCACTTTCAGGCAGCAAgtgggtgctt ... cattgtgtagGTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattctaacttaccaattgaattaccaaatcttatcaacatttttcattgtgtagGTTATAATATGGTGGGCTGGTCTCATGAGGGGTGCTGTGTCTGTGGCCCTTGCTTATAATCAG
                                        tttttcatt  CT-rich tract
                               ttatcaacattttt  TA-rich tract