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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatactcttcagctttgcaggattgctatctttttgcttttttgtaatttttctgtttcatgagcggccattttattttgtccagCTTCAAATGGAAATCCTCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCAGGTTCAATGCTTACCAACAG

Basic information

species Vitis vinifera
transcript Vv14s0030g00570.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00570.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 10
gtaaatactcttcagctttgcaggattgctatctttttgcttttttgtaatttttctgtttcatgagcggccattttattttgtccagCTTCAAATGGAAATCCTCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCAGGTTCAATGCTTACCAACAG
|||| ||    |   |||     | |  |  |  || ||  ||| |    | | |  ||||    |||   | |     | ||||||||||||||||||||||||| |  | ||||||||||||| ||||||||| | | |||  || | ||| | |||||||||
gtaagtaacaattttcttctattgctcacggtgattatgaatttct----tatcttagtttgccaagca--cttcaacatgtgtccagCTTCAAATGGAAATCCTCAACATTCAGATTCTTTGCATTACATTGATGCATATGGTCGGCTAAATTCATACCAACAG

upper sequence: Vv14s0030g00570.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 10
gtaaatactcttcagctttgcaggattgctatctttttgcttttttgtaatttttctgtttcatgagcggccattttattttgtccagCTTCAAATGGAAATCCTCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCAGGTTCAATGCTTACCAACAG
|||  ||    |     |   || | || |   | ||   ||       || ||| ||  |  | |   ||  ||  | |||||||||||||||||||||||||||    | ||||||| ||||| ||||||||| | | |||| |||| ||| | |||||| ||
gtatgtaacaattgttctattagcaatgatgattattgatttc------atctttatggattgttaa--gcacttaaaatttgtccagCTTCAAATGGAAATCCTCACCATTCAGATTCGTTGCATTACATTGATGCATATGGCCGGTTAAATTCATACCAAAAG

upper sequence: Vv14s0030g00570.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaaatactcttcagctttgcaggattgctatctttttgcttttttgtaatttttctgtttcatgagcggccattttattttgtccagCTTCAAATGGAAATCCTCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCAGGTTCAATGCTTACCAACAG
|| | |   ||||   | | |   ||   |||||| |   |  || | ||  ||  |    ||| |      ||  | | |  | |||||||||||||  |||| |||||||||  ||||||||||||||||||||| || ||||| || ||  | || ||||||
gtgattcaccttc--ttctacttcatatatatcttatctttacttagaaaccttgat----cattaagattgatggtctgtctttcagCTTCAAATGGCGATCCCCGAACTCCAAGTTCTTTGCACTACATTGATCCATCAGGCAGATTAAACTCATATCAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgcttttttgtaatttttctgtttcatgagcggccattttattttgtccagCTTCAAATGGAAATCCTCGAACTCCAGATTCTTTGCACTACATTGATCCTTCTGGCAGGTTCAATGCTTACCAACAG
                                        ttttatttt  CT-rich tract
       ttttttgtaatttttc  TA-rich tract