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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtacccttgttttcatattttagcattcaatacttcagttaatttatgcttttgtggcatttcagtacttaatgctttaatgggtactatgggtttcatgtctcaacaatgtttgaatgtgttctgattcttattgtttggcagATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTG

Basic information

species Vitis vinifera
transcript Vv14s0030g00550.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00550.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 14
gtgtacccttgttttcatattttagcattcaatacttcagttaatttatgcttttgtggcatttcagtacttaatgctttaatgggtactatgggtttcatgtctcaacaatgtttgaatgtgttctgattcttattgt--ttggcagATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTG
                              | ||||     |  |  | | |||| |      | || ||   ||   ||| |  |||  |||    |  | | |    | ||   |||||  |  ||| | |  ||||   | |||| | || ||||||||||| ||  ||||||| ||||||||||| || |||||||| || |||||||| || || ||||| || ||||| ||||| |   
-------------------------gtcctactactcatccttgtccaagttttttt----ccttag-accccattaattatttagtagcatgaaaatgctttgttgttagtga--gaatgaataatgaatatacttgtggattgcagGTGCTGGATGCTGATAATGGGCGTCGGTTGGAGAGTTCTACTGGTCGTGTAGCTACACGAGATATGGTGCAATTTGTGCCTATGAGAGAAGTACAAA

upper sequence: Vv14s0030g00550.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA03G40210.1 (Glycine max), 3'ss of exon 14
gtgtacccttgttttcatattttagcattcaatacttcagttaatttatgcttttgtggcatttca-gtacttaatgctttaatgggtactatgggtttcatgtctcaacaatgtttgaatgtgttctgattcttattgtttggcagATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTG
                                   | |   ||||   ||     ||    || |     |   ||   ||| |  |||  |||    |  | | |    |  |   |||||  |    || ||| | | ||| ||| | || ||||||||||| ||  ||| ||| ||||||||||| || |||||||| ||  ||||||| ||||| ||||| || ||||| ||||| |   
----------------------------------gtcctactaatccttgtccaagtttttttccttaggccccattaattatttagtatcatgaaaatgctttgttgttaggga--gaatgaatatatatacttgtggattg-cagGTGCTGGATGCTGATAATGGGCGTCAGTTGGAGAGTTCTACTGGTCGTGTAGCTACAAGAGATATGGTACAATTTGTCCCTATGAGAGAAGTACAAA

upper sequence: Vv14s0030g00550.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 3'ss of exon 14
gtgtacccttgttttcatattttagcattcaatacttcagttaatttatgcttttgtggcatttcagtacttaatgctttaa--tgggtactatgggtttcatgtctcaa-caatgtttgaat-gtgttctgattcttattgtttggcagATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTG
                                                              | ||    ||  |   | ||  | |||  |||   | ||   |  |||  | |         |||   |||   |     | |  ||||| |||||||||||||| ||| | ||||||||||||||||| || ||  |||| || || || || || || ||||| || ||||  ||  | | | 
-------------------------------------------------------------gtacaagttttgttttgtcaagttaggttttatatctgtctctttgcaaatagtaaacatgcagtgacttgaccttgtaaatatttcagATGCTTGATGCTGATAATGGTCGGCGGTTAGAGAGTTCTACTGGTCGAATAGCTACACGGGACATCGTTCAATTTGTCCCTATGAAAGACATCCATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggtttcatgtctcaacaatgtttgaatgtgttctgattcttattgtttggcagATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTG
                                ttctgat  putative branch site (score: 3)
                                      ttcttatt  CT-rich tract
                                     attcttatt  TA-rich tract