1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggaaaaaataaaataacgtgaagtaataatggcagatgatttgtgcccccaacctatcacctttacatctcacatctttcaattttctgtattcttgcagCCAAAGAAGGTTATGTCATTTGAGGATTCAAAACAAAGAGCATGGCAGTGGAAAAAGGCAATAGAGGGGCTTCAAAATCGATGAAATCTGTTTCTGGTTT
species | Vitis vinifera |
transcript | Vv13s0074g00100.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATGACCTCAGCATCCAAGTCACAAGTCCTTCACATTTCAAGATTTGCACG CCAAAGAAGGTTATGTCATTTGAGGATTCAAAACAAAGAGCATGGCAGTGGEST: gi|110373342|gb|EC937569.1|EC937569
genomic: ATGACCTCAGCATCCAAGTCACAAGTCCTTCACATTTCAAGATTTGCACGgtatgtccct ... attcttgcagCCAAAGAAGGTTATGTCATTTGAGGATTCAAAACAAAGAGCATGGCAGTGG
EST: ATGACCTCAGCATCCAAGTCACAAGTCCTTCACATTTCAAGATTTGCACG CCAAAGAAGGTTATGTCATTTGAGGATTCAAAACAAAGAGCATGGCAGTGG
genomic: ATGACCTCAGCATCCAAGTCACAAGTCCTTCACATTTCAAGATTTGCACGgtatgtccct ... attcttgcagCCAAAGAAGGTTATGTCATTTGAGGATTCAAAACAAAGAGCATGGCAGTGG
cccccaacctatcacctttacatctcacatctttcaattttctgtattcttgcagCCAAAGAAGGTTATGTCATTTGAGGATTCAAAACAAAGAGCATGGCAGTGGAAAAAGGCAATAGAGGGGCTTCAAAATCGATGAAATCTGTTTCTGGTTT
atctcac putative branch site (score: 3)
ttttctgtattctt putative PPT
tttcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaaaaaataaaataacgtgaagtaataatggcagatgatttgtgcccccaacctatcacctttacatctcacatctttcaattttctgtattcttgcagCCAAAGAAGGTTATGTCATTTGAGGATTCAAAACAAAGAGCATGGCAGTGGAAAAAGGCAATAGAGGGGCTTCAAAATCGATGAAATCTGTTTCTGGTTT
- aaaaaat
- - aaaataa
- - - - - - - - - - - - - -aatggca
- - - - - - - - - - - - - - - - - - - - - -tgccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - cctatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcaca