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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcatcataaatctcccccaggattgatatcaaaatttctcccttttggaagtggatatgactgctgattatatcttgctttcaactttgtttgtgtaatatttatttacttagtttatgtttgcaaagcctcatttttgttggcttttctgttgaagcaatgttctggtgttctgttgcatcataatctgcagATTGAAGGTAATGACAGATATGCTGACTCTGGACCACCGTTTCTTGTCCTTCTTCATCCTGCTTTGGGCCCTCTTTGGGAGGTCAGCAGACAAAAG

Basic information

species Vitis vinifera
transcript Vv13s0067g01470.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01470.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA18G02900.1 (Glycine max), 3'ss of exon 11
gtatttcatcataaatctcccccaggattgatatcaaaatttctcccttttggaagtggatatgactgctgat-tatatcttgctttcaactttgtttgtgtaatatttatttacttagtttatgtttgcaaagcctcatttttgttggcttttctgttgaagcaatgttctggtgttctgttgcatcataatctgcagATTGAAGGTAATGACAGATATGCTGACTCTGGACCACCGTTTCTTGTCCTTCTTCATCCTGCTTTGGGCCCTCTTTGGGAGGTCAGCAGACAAAAG
                                                       ||  |||||  | || || | | |  ||| |     |||||||   |    ||   ||     ||| || ||   |       | |||  ||   || |  ||     ||||  | |  ||||  | |   || |   ||||||||||||| ||| || |  |||| ||| || |||||||| |||||  ||||||| ||||||||| | || ||||||||||| ||||  |  ||||| 
-------------------------------------------------------gtatatatgtattctaatgtgttttatgcatattgatttgttttcatgtggttgggttg---ggttcattttcatattatactagtttgctta--ttctaggtactttcaattattttatgttacgctttctc-tctcctgcagATTGAAGCTAACGAGAACTATGTTGATTCGGGACCACCATTTCTCATCCTTCTGCATCCTGCTCTCGGTCCTCTTTGGGAAGTCACTAAGCAAAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttggcttttctgttgaagcaatgttctggtgttctgttgcatcataatctgcagATTGAAGGTAATGACAGATATGCTGACTCTGGACCACCGTTTCTTGTCCTTCTTCATCCTGCTTTGGGCCCTCTTTGGGAGGTCAGCAGACAAAAG
                                         atcataat  TA-rich tract