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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgcccaccacagaaaatgcttgtatcaattcttgtaacttaatgtttaattctcaattccagtttgatgacaaattattccttgtgggtgatcctcagATTTTGGTGTCCATACTGAGTATTGCATCCTTGTTCTACCTCTCTAAAACAAATGGCTTCGTGGGAATCTGGGTTGCTTTAACCATCTACATGGTCCTCC

Basic information

species Vitis vinifera
transcript Vv13s0064g00930.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|111283822|gb|EE296911.1|EE296911
EST:     ATGGAGTGAACTTTGGAGCATCGGATTTTGCATATACTGCATACTCCATG                         ATTTTGGTGTCCATACTGAGTATTGCATCCTTGTTCTACCTCTCTAAAACA
genomic: ATGGAGTGAACTTTGGAGCATCGGATTTTGCATATACTGCATACTCCATGgcaagtgccc ... tgatcctcagATTTTGGTGTCCATACTGAGTATTGCATCCTTGTTCTACCTCTCTAAAACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttaattctcaattccagtttgatgacaaattattccttgtgggtgatcctcagATTTTGGTGTCCATACTGAGTATTGCATCCTTGTTCTACCTCTCTAAAACAAATGGCTTCGTGGGAATCTGGGTTGCTTTAACCATCTACATGGTCCTCC
                                                tcctc  CT-rich tract
                          acaaattatt  TA-rich tract