Sequence
atgc intronic sequence ATGC exonic sequence...tgcatcactctagttactaacacttttgaatcatcatacatgctgcagcttgttttcttcaattctattgattaattgttaactaggtgatatctgacagGCACTTCTACATTCTGTTCCATTTGGGAAAATGGTAGTTCTTGATCTATTTGCTGATGCCAAACCAATCTGGAGAACATCCTCTCAATTTTATGGCACTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G033592_T01 (Zea mays), 3'ss of exon 11
---------------------------------tgcatcactctagttacta----acacttttgaatcatcatacatgc---tgcagcttgttttcttcaattctattgattaattg-ttaactaggtg---atatctgacagGCACTTCTACATTCTGTTCCATTTGGGAAAATGGTAGTTCTTGATCTATTTGCTGATGCCAAACCAATCTGGAGAACATCCTCTCAATTTTATGGCACTC
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gtaagctcaagtcttgcttcactgagtttcactttgaacagtcaaataaatgtgataaatcatagaatgaaggtcaatgcatatgttgtttgtccttttaacatctatttacaaataacttaacctgctccttttaactttcagGCACTACTTCACTCTGTTCCAATTGGTAAGATGATAGTTCTCGATTTATTTGCTGATGTCAAGCCCATTTGGAAAGTGTCCTCTCAGTTTTACGGCGTAC
upper sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA10G11720.2 (Glycine max), 3'ss of exon 11
--------tgcatcactctagttactaacacttttgaatcatcatacatgctgcagcttgttttcttcaattctattgattaattgttaactaggtgatatctgacagGCACTTCTACATTCTGTTCCATTTGGGAAAATGGTAGTTCTTGATCTATTTGCTGATGCCAAACCAATCTGGAGAACATCCTCTCAATTTTATGGCACTC
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ttctgccctgtagcagtctacatggtaatgctttttaat-gccaaat-tgccaatgctgcttcaaattgat---atttttttactat--gcgtgataatatttg-cagGCACTTTTACATTCTGTTCCATTTGGGAAGATGATTGTTCTTGATCTATTTGCTGATGTAAAACCAATATGGAAAAATTCCTTTCAGTTTTATGGTACTC
upper sequence: Vv13s0064g00370.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT5G13690.1 (Arabidopsis thaliana), 3'ss of exon 11
tgcatcactctagttactaacacttttgaatcatcatacatgctgcagcttgttttcttcaattctattgattaattgttaactaggtgatatctgacagGCACTTCTACATTCTGTTCCATTTGGGAAAATGGTAGTTCTTGATCTATTTGCTGATGCCAAACCAATCTGGAGAACATCCTCTCAATTTTATGGCACTC
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----------------gtaa-acatccaatttagtgtatatgatgaatgctgattgattcaatatcacagcctcgct----------tgctttctg-cagGCACTCTTACATTCAGTTCCCTTTGGCAAAATGATAGTTCTTGACCTATATGCTGAAGTCAAACCGATATGGAACAAGTCCGCCCAATTTTATGGAACTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagcttgttttcttcaattctattgattaattgttaactaggtgatatctgacagGCACTTCTACATTCTGTTCCATTTGGGAAAATGGTAGTTCTTGATCTATTTGCTGATGCCAAACCAATCTGGAGAACATCCTCTCAATTTTATGGCACTC
tgttaac putative branch site (score: 2)
aattctattgattaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgcatcactctagttactaacacttttgaatcatcatacatgctgcagcttgttttcttcaattctattgattaattgttaactaggtgatatctgacagGCACTTCTACATTCTGTTCCATTTGGGAAAATGGTAGTTCTTGATCTATTTGCTGATGCCAAACCAATCTGGAGAACATCCTCTCAATTTTATGGCACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- catcact
- - - - - - - - ctaacac
- - - - - - - - - - - - - - - - - - -acatgct
- - - - - - - - - - - - - - - - - - - - - - -cagcttg