Sequence
atgc intronic sequence ATGC exonic sequencegtgttttacattatatacttctaaagcctccaatagataatggtcacatatcaaatggaatggaagtgttacaaaatcattctctgcagTTTGGTGATGCTAGCGGCATACAGTCACCAGTTTCATTTGGTGGTTTTGGGAGCTTGACCAGGCACCTTGAGAGGTTGTCAACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0059g01150.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os08g32630.5 (Oryza sativa), 3'ss of exon 10
gtgttttacattatatacttctaaagcctccaatagataatggtcacatatcaaatggaatggaagtgttacaaaatcattctctgcagTTTGGTGATGCTAGCGGCATACAGTCACCAGTTTCATTTGGTGGTTTTGGGAGCTTGACCAGGCACCTTGAGAGGTTGTCAACTG
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gcatgccat-ttctctgcttcggaagcctgttggctgtacccatttctcccccttaactagtaacgcccttcactgctttgcacttcagGTTGGTGATGCTAGTGGAATCCAGTCACCTGTTTCTTTTGGAGGTTTTGGAAGCTTGACAAGGCATCTTGGTCGTTTGTCAAATG
upper sequence: Vv12s0059g01150.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM5G851815_T02 (Zea mays), 3'ss of exon 11
gtgttttacattatatacttctaaagcctccaatagataatggtcacatatcaaatggaatggaagtgttacaaaatcattctctgcagTTTGGTGATGCTAGCGGCATACAGTCACCAGTTTCATTTGGTGGTTTTGGGAGCTTGACCAGGCACCTTGAGAGGTTGTCAACTG
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-----gcatgtgattttctcttaacagaagcctta--ttactcctgcacctgcaagtattctcaatcactg-atgctcttgcatttcagGTTGGCGATGCTAGTGGAATACAGTCACCTGTTTCTTTTGGAGGTTTTGGAAGCTTGACGAGACATCTTGGCCGTTTGTCTAGTG
upper sequence: Vv12s0059g01150.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA14G05100.1 (Glycine max), 3'ss of exon 12
gtgttttacattatatacttctaaagcctccaatagataatg------gtcacatatcaaatggaatggaagtgttacaaaatcattctctgcagTTTGGTGATGCTAGCGGCATACAGTCACCAGTTTCATTTGGTGGTTTTGGGAGCTTGACCAGGCACCTTGAGAGGTTGTCAACTG
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gtaaattgcgttttacacttctgaagcctctataaaattaagccatctatgatctatcaactaatattaaagtaatgaagcttcattctctgtagTTTGGTGATGCTAGTGGCATACAATCACCTGTTTCATTTGGTGGATTTGGAAGCTTGACCAGGCACCTGGGGAGACTGTCAGCTG
upper sequence: Vv12s0059g01150.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT2G32640.1 (Arabidopsis thaliana), 3'ss of exon 11
----------gtgttttacattatatacttctaa----agcct-ccaatagataatggtcacatatcaaatggaatggaagtgttacaaaatcattctctgcagTTTGGTGATGCTAGCGGCATACAGTCACCAGTTTCATTTGGTGGTTTTGGGAGCTTGACCAGGCACCTTGAGAGGTTGTCAACTG
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gttggtttggttcatttatat-ataagcttccaagataagtttgcggattgataatt-tgataaactaaat--aatcaaagttacttacaaattttttactcagTTTGGTGATGCTAGCGGTATTCAATCACCTGTTTCATTTGGGGGTTTTGGAAGTTTGACCAGACACCTTGGAAGATTGTCCAATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32271134|gb|CD720293.1|CD720293EST: TCCATTGCCAGCAGCTTTTGATCGCGTTTTACAG TTTGGTGATGCTAGCGGCATACAGTCACCAGTTTCATTTG
genomic: TCCATTGCCAGCAGCTTTTGATCGCATTTTACAGgtgttttaca ... ttctctgcagTTTGGTGATGCTAGCGGCATACAGTCACCAGTTTCATTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agataatggtcacatatcaaatggaatggaagtgttacaaaatcattctctgcagTTTGGTGATGCTAGCGGCATACAGTCACCAGTTTCATTTGGTGGTTTTGGGAGCTTGACCAGGCACCTTGAGAGGTTGTCAACTG
tcattctct CT-rich tract
atatcaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgttttacattatatacttctaaagcctccaatagataatggtcacatatcaaatggaatggaagtgttacaaaatcattctctgcagTTTGGTGATGCTAGCGGCATACAGTCACCAGTTTCATTTGGTGGTTTTGGGAGCTTGACCAGGCACCTTGAGAGGTTGTCAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG