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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttttatgcattgatcttcaacacaatcacaaactcatttgttcaatctatgaattcacaatcttattttgtcacattggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC

Basic information

species Vitis vinifera
transcript Vv12s0057g01200.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0057g01200.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA02G47860.1 (Glycine max), 3'ss of exon 10
gtaagtttttatgcattgatcttcaacacaatcacaaactcatttgttcaatctatgaattcac-aatcttattttgtcacattgg-atctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
||| | ||| |||   | || || ||           | |||||| |||||   ||||   |   ||| ||| ||  ||  ||||   |||| |||||||||||||||||||||||||||| ||||||||||   | 
gtaggatttcatg---tcatttttaat-------tgtagtcattt-ttcaactcatgatgccgtgaattttaattcttcttattgctgtctgtagGTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACTCG

upper sequence: Vv12s0057g01200.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA14G00760.1 (Glycine max), 3'ss of exon 10
gtaagtttttatgcattgatcttcaacacaatcacaaactcatttgttcaatctatgaattcac-aatcttattttgtcacattgg-atctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
||| | ||  |||      | |      ||||   |   |||||| |||||   ||||       ||| ||| ||  ||| ||||   |||| ||||||||||||| |||||||||||||| ||||||||||   | 
gtaggattacatgtcaaagttt------caattgtag--tcattt-ttcaactcatgatgcggtgaattttaattcttcatattgctgtctgtagGTTGTGGCTCTCGCAAATCAGAAACTTCTTGGACTTAACTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352790687|gb|FQ475445.1|FQ475445
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|30130059|gb|CB915398.1|CB915398
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|71876405|gb|DT025460.1|DT025460
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|30129594|gb|CB914933.1|CB914933
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|110700654|gb|EE077500.1|EE077500
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|349833317|gb|FQ416695.1|FQ416695
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|110368276|gb|EC932247.1|EC932247
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|110371396|gb|EC935385.1|EC935385
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|27584750|gb|CB007445.1|CB007445
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|33402805|gb|CF208432.1|CF208432
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|110361968|gb|EC925474.1|EC925474
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|30133750|gb|CB919089.1|CB919089
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|26259676|gb|CA810739.1|CA810739
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|110361336|gb|EC924802.1|EC924802
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|110362059|gb|EC925566.1|EC925566
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|110357331|gb|EC920800.1|EC920800
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|32246227|gb|CD712046.1|CD712046
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|33403297|gb|CF208924.1|CF208924
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: gi|110723122|gb|EE100072.1|EE100072
EST:     GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT                         GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcatttgttcaatctatgaattcacaatcttattttgtcacattggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
                          aatcttatttt  TA-rich tract