1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gatacctaaccaaatctttggatccacttgttggattcaaaacagaattgcacccatacacctttcttttctcagccgaacttgtgatgttttcatgcagGAGAAACAGCTTTGCAGTGAGATCAGAATCCTCCCTTCACATTATCTCAACATGCTGCACACCATGTTGACAGAGACGTTAAATGGAAACATCACCAGGA
species | Vitis vinifera |
transcript | Vv12s0057g00920.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATGTTTGGGATATCACTGGATTTCCGGGGGAAGATTTACTCTCAGAAACT GAGAAACAGCTTTGCAGTGAGATCAGAATCCTCCCTTCACATTATCTCAACEST: gi|71882374|gb|DT031429.1|DT031429
genomic: ATGTTTGGGATATCACTGGATTTCCGGGGGAAGATTTACTCTCAGAAACTgtaagaattc ... tttcatgcagGAGAAACAGCTTTGCAGTGAGATCAGAATCCTCCCTTCACATTATCTCAAC
EST: ATGTTTGGGATATCACTGGATTTCCGGGGGAAGATTTACTCTCAGAAACT GAGAAACAGCTTTGCAGTGAGATCAGAATCCTCCCTTCACATTATCTCAACEST: gi|110423833|gb|EC990184.1|EC990184
genomic: ATGTTTGGGATATCACTGGATTTCCGGGGGAAGATTTACTCTCAGAAACTgtaagaattc ... tttcatgcagGAGAAACAGCTTTGCAGTGAGATCAGAATCCTCCCTTCACATTATCTCAAC
EST: ATGTTTGGGATATCACTGGATTTCCGGGGGAAGATTTACTCTCAGAAACT GAGAAACAGCTTTGCAGTGAGATCAGAATCEST: gi|71889020|gb|DT038075.1|DT038075
genomic: ATGTTTGGGATATCACTGGATTTCCGGGGGAAGATTTACTCTCAGAAACTgtaagaattc ... tttcatgcagGAGAAACAGCTTTGCAGTGAGATCAGAATC
EST: ATGTTTGGGATATCACTGGATTTCCGGGGGAAGATTTACTCTCAGAAACT GAGAAACAGCTTTGCAGTGAGATCAGAATCCTCCCTTCACATTATCTCAACEST: gi|30135657|gb|CB920995.1|CB920995
genomic: ATGTTTGGGATATCACTGGATTTCCGGGGGAAGATTTACTCTCAGAAACTgtaagaattc ... tttcatgcagGAGAAACAGCTTTGCAGTGAGATCAGAATCCTCCCTTCACATTATCTCAAC
EST: ATGTTTGGGATATCACTGGATTTCCGGGGGAAGATTTACTCTCAGAAACT GAGAAACAGCTTTGCAGTGAGATCAGAATCCTCCCTTCACATTATCTCAAC
genomic: ATGTTTGGGATATCACTGGATTTCCGGGGGAAGATTTACTCTCAGAAACTgtaagaattc ... tttcatgcagGAGAAACAGCTTTGCAGTGAGATCAGAATCCTCCCTTCACATTATCTCAAC
aattgcacccatacacctttcttttctcagccgaacttgtgatgttttcatgcagGAGAAACAGCTTTGCAGTGAGATCAGAATCCTCCCTTCACATTATCTCAACATGCTGCACACCATGTTGACAGAGACGTTAAATGGAAACATCACCAGGA
tgttttc CT-rich tract
tttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatacctaaccaaatctttggatccacttgttggattcaaaacagaattgcacccatacacctttcttttctcagccgaacttgtgatgttttcatgcagGAGAAACAGCTTTGCAGTGAGATCAGAATCCTCCCTTCACATTATCTCAACATGCTGCACACCATGTTGACAGAGACGTTAAATGGAAACATCACCAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - -ccaaatc
- - - - - - - - - - - -ccacttg
- - - - - - - - - - - - - - - - - - - - aacagaa