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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtactctagttttgattcttgaatgccatgttcttaggttagtctgtgatatattgctgatgtctgttgctttgttttggcagAGAGCTCTATGGAACCTTACCTAAGATACTTGCATACATATGTTTCTATATCTGGCCCACACTTGGGATATCTGTATAGTTCAAACTCTCTATTTAATTC

Basic information

species Vitis vinifera
transcript Vv12s0055g00430.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G19570.1 (Glycine max), 3'ss of exon 14
gtaggtactc-tagttttgattc-ttgaatgccatgttctt---aggttagtct-gtgata-tattgctgatgtctgttgctttgttttggcagAGAGCTCTATGGAACCTTACCTAAGATACTTGCATACATATGTTTCTATATCTGGCCCACACTTGGGATATCTGTATAGTTCAAACTCTCTATTTAATTC
|||  ||| |  ||||||||    | ||     ||  || |   |  ||| ||| | || | || ||    | | | ||  ||| |  |  |||| |||   ||||| ||||| |||||||||||| |||||||||||||||||||||| || |||||||| ||| |||||||||| |||||| |||| |||||
gtatttacacacagttttgaagaatagagaataatactcatcaaaatttaatcttgggacagtaatgtaccttttttttaatttttaatttcagAAAGCATCATGGAGCCTTATCTAAGATACTTGTATACATATGTTTCTATATCTGGTCCGCACTTGGGTTATATGTATAGTTCGAACTCTATATTCAATTC

upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G08190.3 (Glycine max), 3'ss of exon 13
----gtaggtactctagttttgattcttgaatgccatgttcttaggttagtctgtgatatattgctgatgtctgttgctttgttt------tggcagAGAGCTCTATGGAACCTTACCTAAGATACTTGCATACATATGTTTCTATATCTGGCCCACACTTGGGATATCTGTATAGTTCAAACTCTCTATTTAATTC------------------------------------------------------------------------------------------------------
     || |  |   |||||| |    | | | | ||   |  |  |||  ||  |  |  |  |     | | ||  ||| |||      |  ||||||||   ||||| || || ||||||||||| ||||||||||| || ||||| || ||||||||||| ||| |||||||||||||||||||||| |||||                                                                                                      
gtatctaagcgcaa-agtttttaaggataactactattcacaaaaattaaactagggaaagtaacatgcttattttattttatttaaataattccagagagcgtcatggagccatatctaagatacttacatacatatgtctccatatcgggtccacacttgggttatatgtatagttcaaactctctattcaattcagGGTTGTGGATATTGAAGAAGCTCAAGGGCACACAATGCATTCACCAACTTACCTTCACAGATGACCCTGATCTTGAGAATACTTTCATCTACAATCTTTC

upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA15G05480.1 (Glycine max), 3'ss of exon 15
gtaggtac-tctagttttgattcttgaatgccatgttcttaggttagtctg-tgatatattgctgatgtctgttgctttgttttgg---cagAGAGCTCTATGGAACCTTACCTAAGATACTTGCATACATATGTTTCTATATCTGGCCCACACTTGGGATATCTGTATAGTTCAAACTCTCTATTTAATTC
|||  ||| | |||||||||    || |    |  | |  |    | |||  |  |       | ||||   ||  ||  ||||     |||| |||   ||||| || || |||||||||||| |||||||||||||||||||||| |||||||| || ||| |||||||||| |||||| |||| |||||
gtatttacatatagttttgaacaatggagaata-atacccatcaaaatctaatattgggacagtaatgtgccttttttatttttaatttcagAAAGCATCATGGAGCCATATCTAAGATACTTGTATACATATGTTTCTATATCTGGTCCACACTTAGGTTATATGTATAGTTCGAACTCTATATTCAATTC

upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G08190.1 (Glycine max), 3'ss of exon 13
----gtaggtactctagttttgattcttgaatgccatgttcttaggttagtctgtgatatattgctgatgtctgttgctttgttttgg------cagAGAGCTCTATGGAACCTTACCTAAGATACTTGCATACATATGTTTCTATATCTGGCCCACACTTGGGATATCTGTATAGTTCAAACTCTCTATTTAATTC
     || |  |   |||||| |    | | | | ||   |  |  |||  ||  |  |  |  |     | | ||  ||| |||         ||||||||   ||||| || || ||||||||||| ||||||||||| || ||||| || ||||||||||| ||| |||||||||||||||||||||| |||||
gtatctaagcgcaa-agtttttaaggataactactattcacaaaaattaaactagggaaagtaacatgcttattttattttatttaaataattccagAGAGCGTCATGGAGCCATATCTAAGATACTTACATACATATGTCTCCATATCGGGTCCACACTTGGGTTATATGTATAGTTCAAACTCTCTATTCAATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcttaggttagtctgtgatatattgctgatgtctgttgctttgttttggcagAGAGCTCTATGGAACCTTACCTAAGATACTTGCATACATATGTTTCTATATCTGGCCCACACTTGGGATATCTGTATAGTTCAAACTCTCTATTTAATTC
                          tgctgat  putative branch site (score: 3)
                                         ctttgtttt  putative PPT
                  tgatatatt  TA-rich tract