Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcaatttgtagatatacatttttttttttgtttcctatacatattacagtgatgagtaaaaaattttcttcacatattgggaattaagatggatttaacttctgcaacagGCGCATATGCTTCTGCATTTTATTGTTTCATCAAATGGGAGTGAATCTTTTCCTACGAAGCAGCAGGACTATGATTCTACACATCTTATGCCCTCAACTG

Basic information

species Vitis vinifera
transcript Vv12s0035g01870.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30304025|gb|CB980819.1|CB980819
EST:     TACTGAAGGATCAGGCAAAGTCTGATGACATTCTAAAAGCTGCTTTCCAT                         GCGCATATGCTTCTGCATTTTATTGTTTCATCAAATGGGAGTGAATCTTTT
genomic: TACTGAAGGATCAGGCAAAGTCTGATGACATTCTAAAAGCTGCTTTCCATgtgagcaatt ... tctgcaacagGCGCATATGCTTCTGCATTTTATTGTTTCATCAAATGGGAGTGAATCTTTT
EST: gi|110711704|gb|EE088489.1|EE088489
EST:     TACTGAAGGATCAGGCAAAGTCTGATGACATTCTAAAAGCTGCTTTCCAT                         GCGCATATGCTTCTGCATTTTATTGTTTCATCAAATGGGAGTGAATCTTTT
genomic: TACTGAAGGATCAGGCAAAGTCTGATGACATTCTAAAAGCTGCTTTCCATgtgagcaatt ... tctgcaacagGCGCATATGCTTCTGCATTTTATTGTTTCATCAAATGGGAGTGAATCTTTT
EST: gi|161717211|gb|FC067217.1|FC067217
EST:     TACTGAAGGATCAGGCAAAGTCTGATGACATTCTAAAAGCTGCTTTCCAT                         GCGCATATGCTTCTGCATTTTATTGTTTCATCAAATGGGAGTGAATCTTTT
genomic: TACTGAAGGATCAGGCAAAGTCTGATGACATTCTAAAAGCTGCTTTCCATgtgagcaatt ... tctgcaacagGCGCATATGCTTCTGCATTTTATTGTTTCATCAAATGGGAGTGAATCTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaaaaattttcttcacatattgggaattaagatggatttaacttctgcaacagGCGCATATGCTTCTGCATTTTATTGTTTCATCAAATGGGAGTGAATCTTTTCCTACGAAGCAGCAGGACTATGATTCTACACATCTTATGCCCTCAACTG
                                     atttaac  putative branch site (score: 3)
                                           cttctgc  CT-rich tract
     aaattttctt  TA-rich tract