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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttgacaattctatagcttcgttatttagctctctttcccgtactgttgacttttgggctatgatttttagGGTGACCGGACAAAAAATGTTGGTGTGGTTGATTCGGAGTATGTAGTTCATTTGGCTCTCCCTACTCTTGGCGTCTTGGATGAAAACGAG

Basic information

species Vitis vinifera
transcript Vv12s0035g01350.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g01350.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA12G28620.1 (Glycine max), 3'ss of exon 12
gtaacttg---acaattctatagc---ttcgttatttagctc--tctttcccgtactgttgacttttgggctatgat----ttttagGGTGACCGGACAAAAAATGTTGGTGTGGTTGATTCGGAGTATGTAGTTCATTTGGCTCTCCCTACTCTTGGCGTCTTGGATGAAAACGAG
||||||||    ||   | | |||   ||| || |||  |    || ||||  |   ||||   ||       |||     ||| |||| || || |  | ||||||||||||||||||||| |||||  |||||||| ||| ||| ||||||||||| | ||   |||  || |||
gtaacttgcatgcaccacaacagcctattcatttttttaccaaatccttccaatgtggttgttattcatctcttgacaatatttcagGGAGATCGAATGAGAAATGTTGGTGTGGTTGATTCTGAGTACATAGTTCATCTGGGTCTGCCTACTCTTGGGGGCTCAAATGGCAATGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcgttatttagctctctttcccgtactgttgacttttgggctatgatttttagGGTGACCGGACAAAAAATGTTGGTGTGGTTGATTCGGAGTATGTAGTTCATTTGGCTCTCCCTACTCTTGGCGTCTTGGATGAAAACGAG
                            tgttgac  putative branch site (score: 3)
                                                ttttt  putative PPT
                                           tatgattttta  TA-rich tract