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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctctctctttctctctctatgatatatgtttatatatatatatctatatatatatatatatattatgtatgtttgtgtatgtgtatatgtatatacacatgcataaatattatatatctgtttgtatttttatataagtctcctactaatattattatacttggcatttgcttgcagTGTCCGCACTCCTATATCGATGAAGTTCTTTCCTCGCTTCTTTTTGCTCTATTTTCTGGTTTTCCACATCTATTTCTTTTCTTATGCTTATG

Basic information

species Vitis vinifera
transcript Vv12s0034g02140.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0034g02140.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: PP1S96_202V6.1 (Physcomitrella patens), 3'ss of exon 12
gtctctctctctttctctctctatgatatatgtttatatatatatatctatatatatatatatatattatgtatgtttgtgtatgtgtatatgtatatacacatgcataaatattatatatctgtttg-tatttttatataagtctcctactaatattattatacttggcatttgcttgcagTGTCCGCACTCCTATATCGATGAAGTTCTTTCCTCGCTTCTTTTTGCTCTATTTTCTGGTTTTCCACATCTATTTCTTTTCTTATGCTTATG
                                                                       | | ||| |||| | |  | | ||| | ||  || |   |||   |   | ||   | |||| | |    ||   |||          || |||||| |||||   ||||| ||  | || ||  |||||||| |||||||||||||||||||||| ||||||||  ||| ||||||||| || ||||| |||||| | || |
--------------------------------------------------------------------gaatttttttctgtaagcggttgtttat-ttcatttggaattataagcttcctttgacggatattgtcacgcgagcaccct----------ttgtacttgccattt---tgcagCGTGAGGACGCCCCTATCGATGCAGTTCTTTCCTCGCTTCTTTTTTCTCTATTTCATGGCTTTCCACATTTACTTCTTCTCTTATACCTACG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatttttatataagtctcctactaatattattatacttggcatttgcttgcagTGTCCGCACTCCTATATCGATGAAGTTCTTTCCTCGCTTCTTTTTGCTCTATTTTCTGGTTTTCCACATCTATTTCTTTTCTTATGCTTATG
                     tactaat  putative branch site (score: 1)
                                            tttgctt  putative PPT
                     tactaatattattata  TA-rich tract