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gtaattctggttttgcatctctattttcagatgctatttcaattattctgctcaatttagttaagtgtcattttattgattcaattcacagAAACAAGAAAGAGACACACAGTTACTTCGAGATTTTGCGGACAGTGGGAATAGATAGGCCATCTGACATGTTATTTGTGACAGATGTCTTCCAAGAAGCT
species | Vitis vinifera |
transcript | Vv12s0028g03470.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TATGGGGACTTGAGAAAATACTTCTGTGGCTTTTTTGATACAACAATGGG AAACAAGAAAGAGACACACAGTTACTTCGAGATTTTGCGGACAGTGGGAATEST: gi|30131293|gb|CB916632.1|CB916632
genomic: TATGGGGACTTGAGAAAATACTTCTGTGGCTTTTTTGATACAACAATGGGgtaattctgg ... caattcacagAAACAAGAAAGAGACACACAGTTACTTCGAGATTTTGCGGACAGTGGGAAT
EST: TATGGGGACTTGAGAAAATACTTCTGTGGCTTTTTTGATACAACAATGGG AAACAAGAAAGAGACACACAGTTACTTCGAGATTTTGCGGACAGTGGGAAT
genomic: TATGGGGACTTGAGAAAATACTTCTGTGGCTTTTTTGATACAACAATGGGgtaattctgg ... caattcacagAAACAAGAAAGAGACACACAGTTACTTCGAGATTTTGCGGACAGTGGGAAT
tttcaattattctgctcaatttagttaagtgtcattttattgattcaattcacagAAACAAGAAAGAGACACACAGTTACTTCGAGATTTTGCGGACAGTGGGAATAGATAGGCCATCTGACATGTTATTTGTGACAGATGTCTTCCAAGAAGCT
tattgat putative branch site (score: 3)
attttattgattcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattctggttttgcatctctattttcagatgctatttcaattattctgctcaatttagttaagtgtcattttattgattcaattcacagAAACAAGAAAGAGACACACAGTTACTTCGAGATTTTGCGGACAGTGGGAATAGATAGGCCATCTGACATGTTATTTGTGACAGATGTCTTCCAAGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC