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...ccatgatttccctattttatatagttcttgttaatctaattataaaaactggagacaagattatccctaatcttctttgccactgtttcctttctttcagATGGTGGATGCTTTCATGGCAGTGAGACCACTTCCCAATATGTTCAACTAGAAATAGTGATTTGAACAACTTTCGATTTGTGGGGATGATTGTTTCATAA
species | Vitis vinifera |
transcript | Vv12s0028g03370.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGAATTGGTGGAAAGACATCGGAGGGCTCGGGCTGCAGTGACTGATGAG ATGGTGGATGCTTTCATGGCAGTGAGACCACTTCCCAATATGTTCAACTAGEST: gi|27581897|gb|CB004592.1|CB004592
genomic: CTGAATTGGTGGAAAGACATCGGAGGGCTCGGGCTGCAGTGACTGATGAGgtaagcttca ... tttctttcagATGGTGGATGCTTTCATGGCAGTGAGACCACTTCCCAATATGTTCAACTAG
EST: CTGAAGTGGTGGAAAGACATCGGAGGGCTCGGGCTGCAGTGACTGATGAG ATGGTGGATGCTTTCATGGCAGTGAGACCACTTCCCAATATGTTCAACTAGEST: gi|110428008|gb|EC994467.1|EC994467
genomic: CTGAATTGGTGGAAAGACATCGGAGGGCTCGGGCTGCAGTGACTGATGAGgtaagcttca ... tttctttcagATGGTGGATGCTTTCATGGCAGTGAGACCACTTCCCAATATGTTCAACTAG
EST: CTGAATTGGTGGAAAGACATCGGAGGGCTCGGGCTGCAGTGACTGATGAG ATGGTGGATGCTTTCATGGCAGTGAGACCACTTCCCAATATGTTCAACTAG
genomic: CTGAATTGGTGGAAAGACATCGGAGGGCTCGGGCTGCAGTGACTGATGAGgtaagcttca ... tttctttcagATGGTGGATGCTTTCATGGCAGTGAGACCACTTCCCAATATGTTCAACTAG
aaactggagacaagattatccctaatcttctttgccactgtttcctttctttcagATGGTGGATGCTTTCATGGCAGTGAGACCACTTCCCAATATGTTCAACTAGAAATAGTGATTTGAACAACTTTCGATTTGTGGGGATGATTGTTTCATAA
ccctaat putative branch site (score: 3)
tccctaatcttctttg CT-rich tract
aagattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatgatttccctattttatatagttcttgttaatctaattataaaaactggagacaagattatccctaatcttctttgccactgtttcctttctttcagATGGTGGATGCTTTCATGGCAGTGAGACCACTTCCCAATATGTTCAACTAGAAATAGTGATTTGAACAACTTTCGATTTGTGGGGATGATTGTTTCATAA
ccatgat
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