Sequence
atgc intronic sequence ATGC exonic sequence...gtttcttataaaaaatattatactttaccagttgctcatggcttagatagtgctttgttgtctcttgtttgactagaatcttctttgccttctaatgtagCTTGCATGGACATGTTATAACTTCTACCAATCAACACCTATGAAACTGGCTGGAGAGAACTATTTTTTTTCTGCTGGACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g00140.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA17G06600.1 (Glycine max), 3'ss of exon 11
gtttcttataaaaaatattatactttaccagttgctcat-ggcttagatagtgctttgttgtctcttgtttgactagaatcttctttgccttctaatgtagCTTGCATGGACATGTTATAACTTCTACCAATCAACACCTATGAAACTGGCTGGAGAGAACTATTTTTTTTCTGCTGGACAG
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ggtttggatgataattaataatttgtgctagaaatatattggtttcaattgctattt-ttctttcaaactatactaaattccaatgcatcctattgttcagCTTGCATGGACTTGTTACAATTTCTACCAATTAACACCAACTAAATTGGCAGGAGAGAACTATTACTTTCGCAATGGACAG
upper sequence: Vv11s0052g00140.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT1G51590.1 (Arabidopsis thaliana), 3'ss of exon 11
gtttcttataaaaaatattatactttaccagttgctcatggcttagatagtgctttgttgtctcttgtttgactagaatcttctttgccttctaatgtagCTTGCATGGACATGTTATAACTTCTACCAATCAACACCTATGAAACTGGCTGGAGAGAACTATTTTTTTTCTGCTGGACAG
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--------------gtgccttagaatctcaattgtatgttgagta--taactttctgctgtgtccttattgct----gtttccctcacttt--actgcagCTTGCCTGGACTTGTTATAACTTTTACCAATCGACACCAACGAAACTTGCTGGAGAGAACTATTTCTTCACTGCAGGGCAG
upper sequence: Vv11s0052g00140.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT3G21160.1 (Arabidopsis thaliana), 3'ss of exon 11
-------------------gtttcttataaaaaatattata----ctttaccagttgctcatggcttagatagtgctttgttgtctc---ttgtttgactagaatcttctttgc---cttctaa------tgtagCTTGCATGGACATGTTATAACTTCTACCAATCAACACCTATGAAACTGGCTGGAGAGAACTATTTTTTTTCTGCTGGACAG
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gtaaacttatgacttgaatgatctttgatcatagcgtcgtaagtgcttcagatctttcgaatttttcgctctctgcttttctgatttaggctgctgagatatagcctttattgctattttccacatattttgcagCTTGCGTGGACATGTTATAACTTTTACCAATCAACTCCAACAAAACTGGCTGGGGAGAATTATTTCTTCAACTCTGGGAGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatagtgctttgttgtctcttgtttgactagaatcttctttgccttctaatgtagCTTGCATGGACATGTTATAACTTCTACCAATCAACACCTATGAAACTGGCTGGAGAGAACTATTTTTTTTCTGCTGGACAG
ttctaat putative branch site (score: 2)
tcttctttgccttct CT-rich tract
ttctaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttcttataaaaaatattatactttaccagttgctcatggcttagatagtgctttgttgtctcttgtttgactagaatcttctttgccttctaatgtagCTTGCATGGACATGTTATAACTTCTACCAATCAACACCTATGAAACTGGCTGGAGAGAACTATTTTTTTTCTGCTGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - -aaaaaat
- - - - - - - - - - - - - - cagttgc
- - - - - - - - - - - - - - - - - -tcatggc