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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtttgaagaatttttttgataaacttaattgttcaatttcatttttcacatgggcatttgtgaatgtcttgcttcatcatgcacgcccttgtgtgagaatggaagtggtcgtgtttctaatcacaatgattcgtgtccttacttcagGTGTCGCATATTCCAAACACATTGTGCATTTATACTCCTATCACAATGGTGATGATCTTCGAAACCACCTAGAG

Basic information

species Vitis vinifera
transcript Vv11s0016g05620.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g05620.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA17G12110.1 (Glycine max), 3'ss of exon 11
gtaatgtttgaagaatttttttgataaacttaattgttcaatttcatttttcacatgggcatttgtgaatgtcttgcttcatcatgcacgcccttgtgtgagaatggaagtggtcgtgtttctaatcacaatgattcgtgtccttacttcagGTGTCGCATATTCCAAACACATTGTGCATTTATACTCCTATCACAATGGTGATGATCTTCGAAACCACCTAGAG
                                                               ||||  |||  || |||  | ||   |||       ||  |  ||  ||   |   ||  | |   | | || |   |   || ||||||||| || ||||| ||||| ||||| ||  |||| ||||||||   ||| ||||||||| ||||||||||||||
--------------------------------------------------------------gtgtgc-tgtgatgtttctgc-tgtttgccta-----gaacacagatttgcaaggagttaaagtttgatttatcctcattgatatttcagGTGTTGCTTATTCTAAACATATTGTTCACATATATTCCTATCATGGTGGGGATGATCTTAGAAACCACCTAGAG

upper sequence: Vv11s0016g05620.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA13G22720.1 (Glycine max), 3'ss of exon 11
gtaatgtttgaagaatttttttgataaacttaattgttcaatttcatttttcacatgggcatttgtg-aatgtcttgcttcatcatgcacgcccttgtgtgagaatggaagtggtcgtgtttctaatcacaatgattcgtgtccttacttcagGTGTCGCATATTCCAAACACATTGTGCATTTATACTCCTATCACAATGGTGATGATCTTCGAAACCACCTAGAG
                                             || ||  | ||| |  ||||||   |||  || |||  | ||   |||        |  |   |  ||   |   ||  | |   | | || |   |   || ||||||||| || ||||| ||||| ||||| ||  |||| ||||||||   ||| ||||||||| ||||||||||||||
-------------------------------------------gtatgttcta-atgagtttttgtgtgttgtgatgtttctgc-tgtttgcctc-----aaagacaaatttgcaaggagttaaagtttgatttatcctcattgatatttcagGTGTTGCTTATTCTAAACATATTGTTCACATATATTCCTATCAAGGTGGGGATGATCTTAGAAACCACCTAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagaatggaagtggtcgtgtttctaatcacaatgattcgtgtccttacttcagGTGTCGCATATTCCAAACACATTGTGCATTTATACTCCTATCACAATGGTGATGATCTTCGAAACCACCTAGAG
                                           tccttac  putative branch site (score: 2)
                                           tccttacttc  CT-rich tract
                     tttctaat  TA-rich tract