1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acctagtttggacacctttttgcattcttgctggtgcattggcattcccagtattctagaatgtacttcttaatattaattgaaactcttgtcactttagGAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGATATTGCTTCCATCACCCAGAAGCTTCTTTCTTCCCCTCTCACAATGGCA
species | Vitis vinifera |
transcript | Vv11s0016g02870.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATGGTTGCATCAGAAGATATAGGTAGACAAATCTTGACATATGGAGAGAG GAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGAEST: gi|22013547|gb|BQ798581.1|BQ798581
genomic: ATGGTTGCATCAGAAGATATAGGTAGACAAATCTTGACATATGGAGAGAGgtatggtctg ... gtcactttagGAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGA
EST: ATGGTTGCATCAGAAGATATAGGTAGACAAATCTTGACATATGGAGAGAG GAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGAEST: gi|46910215|gb|CN545590.1|CN545590
genomic: ATGGTTGCATCAGAAGATATAGGTAGACAAATCTTGACATATGGAGAGAGgtatggtctg ... gtcactttagGAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGA
EST: ATGGTTGCATCAGAAGATATAGGTAGACAAATCTTGACATATGGAGAGAG GAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGAEST: gi|110716318|gb|EE091196.1|EE091196
genomic: ATGGTTGCATCAGAAGATATAGGTAGACAAATCTTGACATATGGAGAGAGgtatggtctg ... gtcactttagGAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGA
EST: ATGGTTGCATCAGAAGATATAGGTAGACAAATCTTGACATATGGAGAGAG GAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGAEST: gi|110382252|gb|EC938898.1|EC938898
genomic: ATGGTTGCATCAGAAGATATAGGTAGACAAATCTTGACATATGGAGAGAGgtatggtctg ... gtcactttagGAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGA
EST: ATGGTTGCATCAGAAGATATAGGTAGACAAATCTTGACATATGGAGAGAG GAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGAEST: gi|22014250|gb|BQ799284.1|BQ799284
genomic: ATGGTTGCATCAGAAGATATAGGTAGACAAATCTTGACATATGGAGAGAGgtatggtctg ... gtcactttagGAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGA
EST: ATGGTTGCATCAGAAGATATAGGTAGACAAATCTTGACATATGGAGAGAG GAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGAEST: gi|22013611|gb|BQ798645.1|BQ798645
genomic: ATGGTTGCATCAGAAGATATAGGTAGACAAATCTTGACATATGGAGAGAGgtatggtctg ... gtcactttagGAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGA
EST: TTGACATATGGAGAGAG GAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGAEST: gi|352763498|gb|FQ473201.1|FQ473201
genomic: TTGACATATGGAGAGAGgtatggtctg ... gtcactttagGAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGA
EST: ATGGTTGCATCAGAAGATATAGGTAGACAAATCTTGACATATGGAGAGAG GAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGA
genomic: ATGGTTGCATCAGAAGATATAGGTAGACAAATCTTGACATATGGAGAGAGgtatggtctg ... gtcactttagGAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGA
tcccagtattctagaatgtacttcttaatattaattgaaactcttgtcactttagGAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGATATTGCTTCCATCACCCAGAAGCTTCTTTCTTCCCCTCTCACAATGGCA
tattaat putative branch site (score: 2)
ctcttgtc putative PPT
aatgtacttcttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctagtttggacacctttttgcattcttgctggtgcattggcattcccagtattctagaatgtacttcttaatattaattgaaactcttgtcactttagGAAACCTGTGGATCATTTCTTGAAGGCTGTGGATGAGGTTACTTTGAAGGATATTGCTTCCATCACCCAGAAGCTTCTTTCTTCCCCTCTCACAATGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - -acacctt
- - - - - - - - - - -gcattct
- - - - - - - - - - - - - - - - - tgcattg
- - - - - - - - - - - - - - - - - - - - - cattccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattgaa