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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatacactatctttctaatatatagaagctgggcaatggctggtctaaccaagtgctgcactttttgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA

Basic information

species Vitis vinifera
transcript Vv11s0016g02850.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os05g44922.1 (Oryza sativa), 3'ss of exon 12
gtttgtatacactatctttctaatatatagaagctgggca----atggctggtct------aaccaagtgctgcactttttgtctat------cagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA
||   |||      |      |  |||  |  | |   ||    ||  |||||||       || ||||  || | ||      |||      |||||||||| || |||||||| ||| |||||||||||||||| ||||||||||| ||||| || || || || |||||| ||||||| |||||||| || ||
gtaactatgtttgcttcacacaggataaggttgttacacatcttattactggtctctattgtactaagttgtgaagttccctattattatttgcagATCCTACCTACATGATCCGAGCTATTCCAAGCAATGCATCAGACAATGTCTACTGCACGCTGCTGGCCCACAGTGCTATTCATGGTGCAATGGCCGGCTA

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os01g53680.1 (Oryza sativa), 3'ss of exon 12
--------------------------------------------------gtttgtatacactatctttctaatatat---agaagctgggcaatggctggtctaaccaagtgctgcactttttgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA
                                                  ||||| |   ||||  |||   || |||   || | ||    |  |  || |  ||  |    |||   ||| |   |  ||||||| || || |||||||||||  |||||||||||||||| ||||||||||| |||||||| || || || |||||  ||||||| |||||||| || ||
gtaaagatcttgtttttatgttcaattctcgatgcacatgcggagtgctagtttgaa-gtactactttttatatgtatctgagtatctccctatggaatgttgcaataacagcctgttatttctaa-tggcagATCCAACCTACATGATCCGTGCAATTCCAAGCAATGCATCAGACAATGTCTACTGCACACTGCTGGCGCACAGTGCCATTCATGGGGCAATGGCTGGATA

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os06g05860.1 (Oryza sativa), 3'ss of exon 12
gtttgtatacactatctttctaatatatagaagctgggcaatggctggtct------aaccaagtgctgcactttttg--tctat--cagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA
||  ||   | || |  ||||| | |    |  |   ||  ||  || | |      ||| || |     |  || ||  |||||  |||||||||| || ||||| |||||  |||| |||||||||||||||||||| |||||||||||  | || || ||||  ||||||||||| ||||| || ||
gtcagtcgcctcttttattctacttttagcatcccaagctttgcttgatttcactgtaacaaaatctcagatcttatgcttctattgcagATCCTACATACATGATACGTGCCATTCCTAGCAATGCATCTGACAATGTGTATTGCACACTGTTGGCACACAGTGTGGTTCATGGAGCCATGGCTGGATA

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G004932_T01 (Zea mays), 3'ss of exon 12
------gtttgtatacactatctttctaat--atatagaagctgggcaat----ggctggtctaaccaagtgctgcactttttgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA
       ||||||     ||| |||   ||  ||||||  |     || |    |  ||||||     | |  | ||  |      |  |||||||||| || ||| |||||||| |||||||||||||||| ||||||||||| || |||||||| || || |||||| | ||||| |||||||| |||||
gtagccatttgtaactcttatttttgctattgatatagttgtaacacatttctagattggtctgtgacaatattcca--tcggaattggcagATCCTACATACATGGTCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTACTGTACACTTCTAGCCCACAGTGCTATCCATGGTGCAATGGCGGGGTA

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 12
-------------------gtttgtatacactatcttt-ctaatatatagaagctgggcaatggctggtctaaccaagtgc-tgcactttttgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA
                    || ||  || |  | ||   |  ||  |   |||  | ||| |     ||| |  |||||| |||  ||||| | | | |||||| || || |||||||||||| |||||||||||||||| ||||||||||||||||| || || || || |||||  ||||||| |||||||| || ||
gtaatcgtcttcttttttacttggtgaacgcagtgttagtttgtaatttatagcatgtcaagga---atctgatgaagtgcctgccatttttttatgt-agATCCAACTTACATGATCCGTGCTATTCCAAGCAATGCATCAGACAATGTCTATTGCACCCTGCTCGCACATAGTGCCATTCATGGTGCAATGGCGGGATA

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G443985_T04 (Zea mays), 3'ss of exon 12
gtttgtatacactatctttctaatatatagaagctgggcaatggctggtctaaccaagtgctgcactttttgtctat--cagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA
||  ||        ||  | | |||| |    ||  |  ||  ||| || ||  ||  |     |  |||  ||||   ||||||| ||||| ||||| |||||  | ||||||||||| ||||| || |||||||||||||| || ||||| || |  || |||||||| ||||| || ||
gtcagtggttttcttcggtgtcatatttcagggccag--aactgctagt-tacacacatctcagatgtttcttctactgcagATCCAACGTACATGATACGTGCCATCCCAAGCAATGCTTCTGATAACGTCTATTGCACACTGCTGGCTCACAGCGTGGTCCATGGAGCCATGGCTGGATA

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA05G36050.1 (Glycine max), 3'ss of exon 11
-----------------------------gtttgtatacactatctttctaatatatagaagc--tgggcaatggctggtctaa-ccaagtgctgcacttttt-----gtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA
                             || ||| | ||   |   |   || |||  | ||  ||   | ||   ||   ||  ||||   |||| |||||      | |  ||||||| |||||||||||||| ||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||| |||||||| ||
gttcgttaagacaaactatacaattatacgtatgtgtgcatgtttgattatatttatgtatgcattgcatactgaaaggaggaaatcaagcattgcattttttttactatttgacagATCCAACGTATATGATCCGAGCTGTTCCAAGCAATGCTTCTGACAACGTGTACTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCGATGGCAGGTTA

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G03570.1 (Glycine max), 3'ss of exon 11
------------------------------------------gtttgtatacactatctttctaatatatagaagctgggcaatggctggtctaa-ccaagtgctgcacttttt------gtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA
                                           | |||  |   |   || |   ||| |      ||   | ||   ||   ||  ||||   |||| |||||       | |  ||||||| |||||||||||||| || |||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||| |||||||| ||
gttcgtaaagacaaaaaactatatatttatacgtatgtgtacatgtgtgcatgttcgattacatttatgtgtgcattgcatactgaaaggaggaaatcaagcattgcatttttttttactatttgacagATCCAACGTATATGATCCGAGCAGTTCCAAGCAATGCTTCTGACAACGTGTACTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCCATGGCAGGTTA

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA01G00870.1 (Glycine max), 3'ss of exon 11
-----------------gtttgtatacactatctttcta-atatatagaagctgggcaatggctggtctaaccaagtgctgcactttttgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA
                 |||  |  | | ||| | | || | | |  |||   | ||||||||||    |   | |   |    ||| ||| |  ||||||| || ||||||||||| ||| ||||||||||||| |||||||| || || ||||||||||||||||||||||| |||||||||||||||||||| ||
gtttgtaaagattaaaagttcatgga-attatgtgtgtacacacactgaaag-gagcaatggctgaaagagtaatgccttctcttttctgttttacagATCCAACCTATATGATCCGAGCTATTCCAAGCAATGCCTCTGACAACGTGTACTGCACACTTCTTGCTCAAAGTGCAGTTCATGGAGCAATGGCAGGTTA

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA07G15170.1 (Glycine max), 3'ss of exon 11
gtttgtatacactatctttc---------taa-----tatatagaagctg-----ggcaatggctggtctaaccaagtgctgcactttttgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA
||||||| | | ||   |||         |||      | | | |  |||      ||||||||||    |   | |  || | |||| ||| |  ||||||| || |||||||| || ||| ||||||||||||| |||||||| || || ||||||||||||||||||||||| |||||||||||||||||||| ||
gtttgtaaagattaaacttcatggaattataagtgtgcacacacacactgaaaagagcaatggctgaaagagtaatgc-cttctctttatgttttacagATCCAACTTATATGATTCGAGCTATTCCAAGCAATGCTTCTGACAACGTGTACTGCACACTTCTTGCTCAAAGTGCAGTTCATGGAGCAATGGCAGGTTA

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: PP1S81_165V6.1 (Physcomitrella patens), 3'ss of exon 13
------------------------------------------------gtttgtatacactatctttctaatatatagaagctgggcaatggctggtctaacca--agtgctgcactttttgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA
                                                |||    | |  | | | |  |  | ||      | | |  |    ||  | |  |  ||| ||   |   |  |    ||||||| ||||| ||||| || ||||||||||||||||| |||||||| || || |||||  | |||||||| || ||  | |||||||| |||||||||||
gtggccatatgcccagttgaaaacttttggttttttctttgctgcttggttctcgtgc-ttctatattcatgaaattccttttagtcgtttttaggcttgaatatgagtactcaccacatgattctgcagATCCAACGTACATGATTCGAGCTGTTCCAAGCAATGCTTCTGACAACGTGTACTGCACTTTGCTTGCTCATAGCGCCATCCATGGAGCTATGGCAGGGTA

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: PP1S282_45V6.1 (Physcomitrella patens), 3'ss of exon 12
--------------------------------------------------------------------------------gtttgtatacactatctttctaat-atatagaagctgggca-atggctggtctaaccaagtgctgcactttttgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA
                                                                                ||  | |    ||  | ||||    |  |  | | ||  |        | |   ||       |   |  |   |||  ||||||| ||||||||||| || ||  ||||||||||||| || ||||||||||| |||||| | || ||||| || ||  | ||||| || |||||||||||
gtacagtagccgtcaactgttctaactgttgagtgatggtgatccgtcttcctggtctacatctgtcgattttttacactgtggggaattgcttacattctggccacgtccatggtgatcttgcattcgataagactgctcattatgccatagttctg-cagATCCGACGTATATGATTCGAGCAATTCCAAGCAATGCTTCGGACAATGTCTACTGCACATTGCTGGCTCATAGCGCCATCCATGGGGCTATGGCAGGGTA

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: PP1S131_40V6.1 (Physcomitrella patens), 3'ss of exon 12
-----------------------------------------------------------------------------------------------------gtttgtatacactatctttctaatatatagaagctgggcaatggctggtctaaccaagtgctgcact--ttttgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA
                                                                                                       | | | |     |    ||   |   ||   |   |||  |   | | | || |||      |    | | || | | |||||||| ||| ||||| || ||  | || |||||||| ||||||||||||||||||||  | || |||||  ||||  |||||||||| ||||| || ||
gtatgataaaatgaccaaaaccttcattggtctctctctctttctctctctttctctctctacctcacagatatcgacgtcaagtgaaaattttggactaaactagcagaagaccttgcgcttg-acccagtttcaaagcatcga--gatttgactaagaataaaatcactgtggttttttagATCCTAAGTACATGATTCGAGCGATACCGAGCAATGCTTCTGACAATGTCTATTGCACCTTGCTCGCTCATGGTGCGATTCATGGAGCCATGGCTGGTTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|46918678|gb|CN548007.1|CN548007
EST:     GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|30329681|gb|CD012943.1|CD012943
EST:     GATCATTTCTCANCAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|29784840|gb|CB341314.2|CB341314
EST:     GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|161706980|gb|FC057287.1|FC057287
EST:     ATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: ATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|33403868|gb|CF209495.1|CF209495
EST:     ACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: ACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|33409346|gb|CF214973.1|CF214973
EST:     GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|34320835|gb|CF373589.1|CF373589
EST:     GCATAACTCTCAAATATATAG                         ATCCTACGTATATGATTCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: GCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|30256405|gb|CB972248.1|CB972248
EST:     GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|33409425|gb|CF215052.1|CF215052
EST:     GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|110363721|gb|EC927331.1|EC927331
EST:     GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|71884224|gb|DT033279.1|DT033279
EST:     GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|161705710|gb|FC056619.1|FC056619
EST:     ATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: ATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|110361259|gb|EC924720.1|EC924720
EST:     GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|71882578|gb|DT031633.1|DT031633
EST:     GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|30256378|gb|CB972221.1|CB972221
EST:     GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|30256486|gb|CB972329.1|CB972329
EST:     GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|110361880|gb|EC925383.1|EC925383
EST:     GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|110729768|gb|EE106084.1|EE106084
EST:     GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
EST: gi|351045413|gb|FQ447678.1|FQ447678
EST:     GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAG                         ATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT
genomic: GATCATTTCTCAACAAGTAAAAGGATGGGCATAACTCTCAAATATATAGgtttgtatac ... tgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatagaagctgggcaatggctggtctaaccaagtgctgcactttttgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA
                      gtctaac  putative branch site (score: 2)
                                        ctttttgtct  putative PPT
                                       acttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgtatacactatctttctaatatatagaagctgggcaatggctggtctaaccaagtgctgcactttttgtctatcagATCCTACGTATATGATCCGTGCTGTTCCAAGCAATGCATCTGACAATGTCTATTGCACACTTCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGGTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA