1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttatttcctctcaaattctcttgttcttggaacaccaaaccctaacaattagttttcattcatttcttccatacactcatatttggtaccataaacagGGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAGATCCCGGGAATGATCATATCCACTGCAGCAGATGGCTTCAATGTCCTGATGCCTTCAAACA
species | Vitis vinifera |
transcript | Vv11s0016g02270.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATGTAAATGCCCCCGAAGATTTACCACCACAACTTCTCTTTGTTCATCAG GGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAGATCCCGGGAATGEST: gi|110410877|gb|EC976571.1|EC976571
genomic: AAGTAAATGCCCCCGAAGATTTACCACCACAACTTCTCTTTGTTCATCAGgttatttcct ... ccataaacagGGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAGATCCCGGGAATG
EST: ATGTAAATGCCCCCGAAGATTTACCACCACAACTTCTTTTTGTTCATCAG GGACAAAAAGACTTGAAAGAACTCCACTGGCATTTTCAGATCCCGGGAATGEST: gi|110362753|gb|EC926305.1|EC926305
genomic: AAGTAAATGCCCCCGAAGATTTACCACCACAACTTCTCTTTGTTCATCAGgttatttcct ... ccataaacagGGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAGATCCCGGGAATG
EST: ATGTAAATGCCCCCGAAGATTTACCACCACAACTTCTCTTTGTTCATCAG GGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAGATCCCGGGAATGEST: gi|110389219|gb|EC954039.1|EC954039
genomic: AAGTAAATGCCCCCGAAGATTTACCACCACAACTTCTCTTTGTTCATCAGgttatttcct ... ccataaacagGGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAGATCCCGGGAATG
EST: ATGTAAATGCCCCCGAAGATTTACCACCACAACTTCTCTTTGTTCATCAG GGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAGATCCCGGGAATGEST: gi|110714196|gb|EE090829.1|EE090829
genomic: AAGTAAATGCCCCCGAAGATTTACCACCACAACTTCTCTTTGTTCATCAGgttatttcct ... ccataaacagGGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAGATCCCGGGAATG
EST: ATGTAAATGCCCCCGAAGATTTACCACCACAACTTCTCTTTGTTCATCAG GGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAAATCCCGGGAATGEST: gi|30137851|gb|CB923189.1|CB923189
genomic: AAGTAAATGCCCCCGAAGATTTACCACCACAACTTCTCTTTGTTCATCAGgttatttcct ... ccataaacagGGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAGATCCCGGGAATG
EST: ATGTAAATGCCCCCGAAGATTTACCACCACAACTTCTCTTTGTTCATCAG GGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAGATCCCGGGAATGEST: gi|30134182|gb|CB919520.1|CB919520
genomic: AAGTAAATGCCCCCGAAGATTTACCACCACAACTTCTCTTTGTTCATCAGgttatttcct ... ccataaacagGGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAGATCCCGGGAATG
EST: ATGTAAATGCCCCCGAAGATTTACCACCACAACTTCTCTTTGTTCATCAG GGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAGATCCCGGGAATGEST: gi|83274640|gb|DV938736.1|DV938736
genomic: AAGTAAATGCCCCCGAAGATTTACCACCACAACTTCTCTTTGTTCATCAGgttatttcct ... ccataaacagGGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAGATCCCGGGAATG
EST: ATGTAAATGCCCCCGAAGGTTTACCACCACAACTTCTCTTTGTTCATCAG GGACAAAAAGACTTGAAAGAACTCCACTGGCATTTTCAGATCCCGGGAATG
genomic: AAGTAAATGCCCCCGAAGATTTACCACCACAACTTCTCTTTGTTCATCAGgttatttcct ... ccataaacagGGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAGATCCCGGGAATG
aacaattagttttcattcatttcttccatacactcatatttggtaccataaacagGGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAGATCCCGGGAATGATCATATCCACTGCAGCAGATGGCTTCAATGTCCTGATGCCTTCAAACA
ccctaac putative branch site (score: 2)
ttagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatttcctctcaaattctcttgttcttggaacaccaaaccctaacaattagttttcattcatttcttccatacactcatatttggtaccataaacagGGACAAAAAGACTTGAAAGAACTCCACTGGCATTCTCAGATCCCGGGAATGATCATATCCACTGCAGCAGATGGCTTCAATGTCCTGATGCCTTCAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG