Sequence
atgc intronic sequence ATGC exonic sequence...gtagttggtaaagcacaatattgttattgttatgattataatttttattttcattagagttggtaaagcatgtttctgatgctattcttattgattacagCCTGTTCATAAATGGATGGTTCGCCATCTCTATTTTCCATGTCTACGGAATGGGATATCTAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA13G16560.1 (Glycine max), 3'ss of exon 11
gtagttggtaaagcacaatattgttattgttatgattataatttttattt-tcattagagttggtaaagcat--gttt---ctgatgctattcttattgattacagCCTGTTCATAAATGGATGGTTCGCCATCTCTATTTTCCATGTCTACGGAATGGGATATCTAAG
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--aaatggt----tttaaaactgtctttcagaacatatcattaattatttatcacgtaaagttccaaaccattagtataatctgagcggaatcttttacattgcagCCTGTTCACAAATGGATGATCCGCCACCTATATTTTCCATGTTTAAGGCACGGTATACCAAAG
upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA17G06120.1 (Glycine max), 3'ss of exon 11
gtagttggtaaagcacaatattgttattgttatgattataatttttattt-tcattagagttggtaaagcat--gttt---ctgatgctattcttattgattacagCCTGTTCATAAATGGATGGTTCGCCATCTCTATTTTCCATGTCTACGGAATGGGATATCTAAG
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--aaatggt----tttaaaactgtctttcagaacatatcattgattattcatcacttaaagttccaaaccattagtataatctgagtggaatcttttacattgcagCCTGTTCACAAATGGATGATCCGCCACCTATATTTTCCATGTTTAAGGCACGGTCTACCAAAG
upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT2G19450.1 (Arabidopsis thaliana), 3'ss of exon 11
gtagttggtaaagcacaatattgttattgttatgattataatttttattttcat-tagagttggtaaagcatgtttctgatgctattcttattgattacagCCTGTTCATAAATGGATGGTTCGCCATCTCTATTTTCCATGTCTACGGAATGGGATATCTAAG
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-----------------gtatggttctcttcctaaacatcaccttcttttgtacacaaaatagaagaagagagctaattaagatcttgttttccttgacagCCTGTTCATAAATGGATGGTTCGACATATATACTTCCCGTGCTTGCGCAGCAAGATACCAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattttcattagagttggtaaagcatgtttctgatgctattcttattgattacagCCTGTTCATAAATGGATGGTTCGCCATCTCTATTTTCCATGTCTACGGAATGGGATATCTAAG
tattgat putative branch site (score: 3)
ttcttatt CT-rich tract
tattcttattgatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagttggtaaagcacaatattgttattgttatgattataatttttattttcattagagttggtaaagcatgtttctgatgctattcttattgattacagCCTGTTCATAAATGGATGGTTCGCCATCTCTATTTTCCATGTCTACGGAATGGGATATCTAAG
-tagttgg
- - - - -aaagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gagttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct