Sequence
atgc intronic sequence ATGC exonic sequencegttggctttctgagtattctctccatctatcaaaagaagtattctcttcatatttttgtctgcattttctaatctgcctatatgattcctcactataacatttgcagATGGGTATGAAGGAAGATAATGATGAAGTCACAACCAAGACACGGATTTTGTCTCTTGAGCTTCTACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA17G04890.1 (Glycine max), 3'ss of exon 11
gttggctttctgagtattctctccatctatcaaaagaagtattctcttcatatttttgtctgcattttctaatctgcctatatgattcctcactataacatttg-cagATGGGTATGAAGGAAGATAATGATGAAGTCACAACCAAGACACGGATTTTGTCTCTTGAGCTTCTACAG
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-------------gttggttctctaact-ttaactatagctttgtggttaatttcttgtgaacattat-----------atatacttcttaatt----tatttgacagATGGGTATGAAGGAAGATAATGATGAAGTTACAACGAAGACGAGGATATTGTCTCTTGAGCTTCTTCAG
upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 10
gttggctttctgagtattctctccatctatcaaaagaagtattctcttcatatttttgtctgcattttctaatctgcctatatgattcctcactataacatttg-cagATGGGTATGAAGGAAGATAATGATGAAGTCACAACCAAGACACGGATTTTGTCTCTTGAGCTTCTACAG
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-----------gttggttctctcactttaacaatgg---cattgtggttaatttcttgtgaacattac-----------atatacttcttaatt----tatttgacagATGGGTATGAAGGAAGATAATGATGAAGTTACAACGAAGACGAGGATATTGTCGCTTGAGCTTCTTCAG
upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT3G43300.2 (Arabidopsis thaliana), 3'ss of exon 10
gttggctttctgagtattctctccatctatcaaaagaagtattctcttcatatttttgtctgcattttctaatctgcctatatgattcctcactataacatttg---cagATGGGTATGAAGGAAGATAATGATGAAGTCACAACCAAGACACGGATTTTGTCTCTTGAGCTTCTACAG
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---------------------gttggcttttttttatggttccatctctctattcttgacta-gctatttgtggtgcttatgtgacaatttttt-taagttctgtatcagATGGGTATGAAAGAAGATAGTGATGAAGTCACAACCAAGACCCGTATATTGTCTCTTGAGCTTCTTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttgtctgcattttctaatctgcctatatgattcctcactataacatttgcagATGGGTATGAAGGAAGATAATGATGAAGTCACAACCAAGACACGGATTTTGTCTCTTGAGCTTCTACAG
attttctaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggctttctgagtattctctccatctatcaaaagaagtattctcttcatatttttgtctgcattttctaatctgcctatatgattcctcactataacatttgcagATGGGTATGAAGGAAGATAATGATGAAGTCACAACCAAGACACGGATTTTGTCTCTTGAGCTTCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT