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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctttttgcctaatttttttatttattttttggtttttaatcctttaatcctgcacaagggtgcttcagcattgactttgaccttcgatacaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTACAGCTTTCTTCCATGCCTAATGTTTCCTTAACTATTGGTGGTAAAGTTT

Basic information

species Vitis vinifera
transcript Vv10s0116g01210.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA09G00810.1 (Glycine max), 3'ss of exon 10
gtgagctttttgcctaatttttttatttattttttggtttttaatcctttaatcctgcacaagggtgcttcagcattgactttgacctt-cgataca---atttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTACAGCTTTCTTCCATGCCTAATGTTTCCTTAACTATTGGTGGTAAAGTTT
                             |   || ||||||| |    || |   |  |    || ||      | || | |  ||||  ||||     ||| ||||||||||||  | |||| | |||||||||| ||||| | || ||||||  | |||| ||||| ||||||| ||||||||| ||||||||||| |||||||
----------------------------gtgagttagtttttattttactatttgagtgctcaagttctgt--tttggattctagccttatgatattgatattgcagCTTTGTGATAAATTGCCTAACCCAATGGGACAATCATCGGTTGACTGTGAAAAGCTCTCTTCAATGCCTATTGTTTCCTTCACTATTGGTGGAAAAGTTT

upper sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA15G11670.1 (Glycine max), 3'ss of exon 10
gtgagctttttgcctaatttttttatttattttttggt-ttttaatcctttaatcctgcacaagggtgcttcagcattgactttgacctt----cgatacaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTACAGCTTTCTTCCATGCCTAATGTTTCCTTAACTATTGGTGGTAAAGTTT
                 |   || || | | ||||  |   | | | ||  |||||||     |     ||     |||| | |  ||||     |||   |||||||||||||||   | |||| | ||||||||||  |||| | || ||||||  | |||| ||||| ||||||| ||||||||| ||||||||||| |||||||
----------------gtgagttaatctttattttactacctgagtactcaaatcctgtttttgc---ttttgattttgattctagccttatgatgatgacatttcagCTTTGTGAAAAATTGCCTAACCCAATGGGACCATCATCCGTTGACTGTGGAAAGCTCTCTTCAATGCCTATTGTTTCCTTTACTATTGGTGGAAAAGTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77577410|gb|DV217422.1|DV217422
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|30300182|gb|CB976976.1|CB976976
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|32247021|gb|CD712840.1|CD712840
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAACGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|30127472|gb|CB912811.1|CB912811
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|27579600|gb|CB002295.1|CB002295
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAACGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|56409317|gb|CX017569.1|CX017569
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAACGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|26266741|gb|CA817804.1|CA817804
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|71881802|gb|DT030857.1|DT030857
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|34549550|gb|CF517782.1|CF517782
EST:     AGCCTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGGCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|110395600|gb|EC961267.1|EC961267
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|110718432|gb|EE095257.1|EE095257
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|34549541|gb|CF517773.1|CF517773
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|33402264|gb|CF207891.1|CF207891
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|110701137|gb|EE078403.1|EE078403
EST:     AGCTTCNGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|30326639|gb|CD009901.1|CD009901
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|110692890|gb|EE068644.1|EE068644
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|26264648|gb|CA815711.1|CA815711
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|71890243|gb|DT039298.1|DT039298
EST:     AGCTTCAGCAGAATCATACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|34550114|gb|CF518332.1|CF518332
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|110724332|gb|EE100065.1|EE100065
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGGAGA-TCAGCTGTG
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGG-AGAATCAGCTGTG
EST: gi|27583889|gb|CB006584.1|CB006584
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAACGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|32269157|gb|CD718316.1|CD718316
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|34542385|gb|CF510617.1|CF510617
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|110387693|gb|EC952381.1|EC952381
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|46918171|gb|CN547500.1|CN547500
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|71889630|gb|DT038685.1|DT038685
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|110724931|gb|EE101189.1|EE101189
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|26265277|gb|CA816340.1|CA816340
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|110716609|gb|EE091739.1|EE091739
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|30253215|gb|CB970766.1|CB970766
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAAATGGGGAGAATCAGCTGTGGACTGTT
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAA-TGGG-AGAATCAGCTGTGGACTGTT
EST: gi|34549014|gb|CF517246.1|CF517246
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|87584007|gb|DY473330.1|DY473330
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|27585499|gb|CB008194.1|CB008194
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAACGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|71884619|gb|DT033674.1|DT033674
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|110394775|gb|EC960081.1|EC960081
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|28960026|gb|CB340014.1|CB340014
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|34549024|gb|CF517256.1|CF517256
EST:     AGCCTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|110396003|gb|EC961677.1|EC961677
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|77589411|gb|DV223973.1|DV223973
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|30300771|gb|CB977565.1|CB977565
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
EST: gi|30126510|gb|CB911849.1|CB911849
EST:     AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAACGAG                         CTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA
genomic: AGCTTCGGCAGAATCAGACAAAAGAACGTATATTGGAGTATGTGAATGAGgtgagctttt ... acaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatcctgcacaagggtgcttcagcattgactttgaccttcgatacaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTACAGCTTTCTTCCATGCCTAATGTTTCCTTAACTATTGGTGGTAAAGTTT
                                           atacaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagctttttgcctaatttttttatttattttttggtttttaatcctttaatcctgcacaagggtgcttcagcattgactttgaccttcgatacaatttcagCTTTGTGATCGACTGCCGAGCCCAATGGGAGAATCAGCTGTGGACTGTTTACAGCTTTCTTCCATGCCTAATGTTTCCTTAACTATTGGTGGTAAAGTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG