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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtctttctgtgcttgcttgaaatgactcatcacttggcatttgcttttctggttttatgttgaatgccttgtgctttacctctttttggttctaagagtttgttttgtgtttcttttttttctttttttcctaattcaatttcatcagACATGAATCGCTGGCAAGATGGTGCAATAGTAGCTAATAATCCTACTGTTTTTTCCATGAGGGAAGCACAACTCTTATGGCCTGACACAAGAATTGACAC

Basic information

species Vitis vinifera
transcript Vv10s0116g00830.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA17G01850.1 (Glycine max), 3'ss of exon 11
gtactgtctttctgtgcttgcttgaaatgactcatcacttggcatttgcttttctggt-tttatgttgaatgccttgtgctttacctctttttggttctaagagtttgttttgtgtttcttttttttctttttttcctaattcaattt--catcagACATGAATCGCTGGCAAGATGGTGCAATAGTAGCTAATAATCCTACTGTTTTTTCCATGAGGGAAGCACAACTCTTATGGCCTGACACAAGAATTGACAC
                                       |     || || | ||| | | |   |  | |    |||  ||||  | |  ||  ||| |    | ||| |||| ||| |   |||  || ||||| |  | |||  |  | | |||  | || ||||||||||||||||||||||| ||||| ||||||||  ||||| |||| || |||||||||||  | |||||||| |||| |||||||  
--------------------------------------gtactgattactgtgctgttgtgtgcatcaatttggctgtattttagttttagttatttccatt--tctgtattgtttttttacatttatttattttcatcctgcaacgtgccttaagATGTCAACCGCTGGCAAGATGGTGCAATAGTGGCTAACAATCCTACAATTTTTGCCATAAGAGAAGCACAACTTCTGTGGCCTGATACAAAAATTGACTG

upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA07G38890.1 (Glycine max), 3'ss of exon 10
gtactgtctttctgtgcttgcttgaaatgactcatcacttggcatttgcttttctggt-tttatgttgaatgccttgtgctttacctctttttggttctaagagtttgttttgtgtttcttttttttctttttttcctaattcaatttcatcagACATGAATCGCTGGCAAGATGGTGCAATAGTAGCTAATAATCCTACTGTTTTTTCCATGAGGGAAGCACAACTCTTATGGCCTGACACAAGAATTGACAC
                                       |     || || | ||| | |||   |  | |    |||  ||||  | |  ||  ||| |    | | || |   ||   | | ||| ||||  ||||    || |  | | |||  | || ||||||||||||||||| ||||| ||||| ||||||||  ||||| |||| || |||||||||||  | ||||| || |||| |||||||  
--------------------------------------gtactgattactctgctgttgtttgcatcaattaggctgtattttagttttagttatttccatttctgtattgttatttatgtgtatttattttcatcctgcaaca-tgccttaagATGTCAACCGCTGGCAAGATGGTGCGATAGTGGCTAACAATCCTACAATTTTTGCCATAAGAGAAGCACAACTTCTGTGGCCAGATACAAAAATTGACTG

upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT1G61850.2 (Arabidopsis thaliana), 3'ss of exon 11
gtactgtctttctgtgcttgcttgaaatgactcatcacttggcatttgcttttctggttttatgttgaatgccttgtgctttacctctttttggttctaagagtttgttttgtgtttcttttttttctttttttcctaattcaatttcatcagACATGAATCGCTGGCAAGATGGTGCAATAGTAGCTAATAATCCTACTGTTTTTTCCATGAGGGAAGCACAACTCTTATGGCCTGACACAAGAATTGACAC
                                         | |   |  |  ||  | |  | |  | |  ||| | | | ||   || |||    ||||  |||    ||   || | || |||| ||| |   | ||| |   ||||         ||||||||||||||||||||||||| || || ||||||||  | ||| |||| || |||||||||||  ||||||||||||||| ||||||   
-----------------------------------------gtacaagtctaccttctctattctccact--cttatccatgactctttgttg----taagcttttacgctgatattatcttgtttcctttctaaatcattaagACTCAT---------ATCGCTGGCAAGATGGTGCAATAGTGGCAAACAATCCTACAATCTTTGCCATCAGAGAAGCACAACTTCTATGGCCTGACACAAAAATTGATTG

upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT1G61850.1 (Arabidopsis thaliana), 3'ss of exon 11
gtactgtctttctgtgcttgcttgaaatgactcatcacttggcatttgcttttctggttttatgttgaatgccttgtgctttacctctttttggttctaagagtttgttttgtgtttcttttttttctttttttcctaattcaatttcatcagACATGAATCGCTGGCAAGATGGTGCAATAGTAGCTAATAATCCTACTGTTTTTTCCATGAGGGAAGCACAACTCTTATGGCCTGACACAAGAATTGACAC
                                            | | | ||     || |    |      ||| | | | ||   || |||    ||||  |||    ||   || | || |||| ||| |   | ||| |   ||||         ||||||||||||||||||||||||| || || ||||||||  | ||| |||| || |||||||||||  ||||||||||||||| ||||||   
-------------------------------------------gtctaccttctctattctccact------cttatccatgactctttgttg----taagcttttacgctgatattatcttgtttcctttctaaatcattaagACTCAT---------ATCGCTGGCAAGATGGTGCAATAGTGGCAAACAATCCTACAATCTTTGCCATCAGAGAAGCACAACTTCTATGGCCTGACACAAAAATTGATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagagtttgttttgtgtttcttttttttctttttttcctaattcaatttcatcagACATGAATCGCTGGCAAGATGGTGCAATAGTAGCTAATAATCCTACTGTTTTTTCCATGAGGGAAGCACAACTCTTATGGCCTGACACAAGAATTGACAC
                                   tcctaat  putative branch site (score: 2)
                tttcttttttttcttt  CT-rich tract
                    ttttttttcttttttt  TA-rich tract